Variant report

Variant	rs28760360
Chromosome Location	chr4:87028403-87028404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87024355..87027343-chr4:87027765..87029282,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109339	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28373627	1.00[AFR][1000 genomes]
rs28433471	1.00[AFR][1000 genomes]
rs57298875	1.00[AFR][1000 genomes]
rs9684602	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005338	chr4:87023398-87108555	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87005000-87050400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:87005600-87031200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:87005600-87035200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:87010800-87035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:87011400-87035600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:87023400-87038800	Weak transcription	Brain Anterior Caudate	brain
7	chr4:87025600-87029000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:87026000-87029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:87026800-87032600	Weak transcription	Fetal Brain Male	brain
10	chr4:87027400-87029400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:87027800-87029800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:87027800-87029800	Enhancers	Osteobl	bone
13	chr4:87027800-87030000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:87028000-87029000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:87028200-87028600	Flanking Active TSS	Ovary	ovary
16	chr4:87028200-87028800	Enhancers	Colon Smooth Muscle	Colon
17	chr4:87028200-87029600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:87028200-87030000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:87028400-87028600	Flanking Active TSS	Aorta	Aorta
20	chr4:87028400-87028600	Enhancers	Fetal Lung	lung
21	chr4:87028400-87028600	Enhancers	Fetal Stomach	stomach
22	chr4:87028400-87028600	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links