Variant report

Variant	rs2876835
Chromosome Location	chr7:39400589-39400590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39396368..39399059-chr7:39399429..39401562,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10248165	0.86[ASN][1000 genomes]
rs10251013	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10269183	0.87[ASN][1000 genomes]
rs10951603	0.83[ASN][1000 genomes]
rs11971775	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1558159	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1990243	0.96[ASN][1000 genomes]
rs2190887	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2237411	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2299135	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299137	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299140	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299141	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2329388	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2329389	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2329390	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2329391	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800854	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60586729	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6962623	0.82[ASN][1000 genomes]
rs740509	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs887013	0.95[ASN][1000 genomes]
rs917401	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39396000-39403400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39399400-39400800	Enhancers	Fetal Intestine Large	intestine
3	chr7:39399600-39401000	Enhancers	Fetal Kidney	kidney
4	chr7:39399800-39401000	Enhancers	NH-A	brain
5	chr7:39400000-39400800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:39400000-39400800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:39400000-39400800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:39400000-39400800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:39400200-39400800	Enhancers	Small Intestine	intestine
10	chr7:39400400-39400800	Enhancers	Duodenum Mucosa	Duodenum
11	chr7:39400400-39401200	Bivalent Enhancer	Fetal Intestine Small	intestine

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