Variant report

Variant	rs2877576
Chromosome Location	chr14:70053939-70053940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70053354..70055417-chr14:70232629..70234242,2	MCF-7	breast:
2	chr14:70051891..70054400-chr14:70161480..70163976,2	K562	blood:
3	chr14:70052822..70055653-chr17:57919010..57921977,2	MCF-7	breast:
4	chr14:70050885..70055359-chr14:70192126..70194708,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10747300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899302	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902736	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58585757	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142060	0.93[EUR][1000 genomes]
rs8015482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1335	chr14:70036126-70062584	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70041600-70060400	Weak transcription	Esophagus	oesophagus
2	chr14:70043800-70067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70049800-70055600	Weak transcription	Hela-S3	cervix
4	chr14:70051600-70058000	Weak transcription	Fetal Brain Female	brain
5	chr14:70052200-70054200	Weak transcription	Pancreas	Pancrea
6	chr14:70052200-70054600	Enhancers	HUVEC	blood vessel
7	chr14:70052400-70054400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:70052600-70054400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr14:70052800-70054000	Enhancers	Adipose Nuclei	Adipose
10	chr14:70053000-70054400	Enhancers	Fetal Muscle Leg	muscle
11	chr14:70053000-70054600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:70053200-70055000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr14:70053400-70054200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:70053400-70054400	Enhancers	Fetal Muscle Trunk	muscle
15	chr14:70053400-70054400	Enhancers	Left Ventricle	heart
16	chr14:70053400-70054400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr14:70053400-70054600	Enhancers	Lung	lung
18	chr14:70053400-70054600	Enhancers	Right Ventricle	heart
19	chr14:70053400-70054600	Enhancers	Spleen	Spleen
20	chr14:70053400-70054800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr14:70053600-70054000	Weak transcription	Right Atrium	heart
22	chr14:70053600-70054200	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:70053600-70054800	Enhancers	Stomach Mucosa	stomach
24	chr14:70053800-70054400	Weak transcription	Colonic Mucosa	Colon
25	chr14:70053800-70054400	Enhancers	Gastric	stomach

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