Variant report

Variant	rs28776598
Chromosome Location	chr14:77962763-77962764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10147023	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10149323	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12433414	0.91[EUR][1000 genomes]
rs12436583	0.84[EUR][1000 genomes]
rs13379482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4903589	0.94[EUR][1000 genomes]
rs6574379	0.87[EUR][1000 genomes]
rs7147867	0.94[EUR][1000 genomes]
rs7155181	0.91[EUR][1000 genomes]
rs73319055	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8004601	0.96[EUR][1000 genomes]
rs8010250	0.96[EUR][1000 genomes]
rs8010934	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:77957400-77963200	Weak transcription	HepG2	liver
3	chr14:77962200-77964400	Weak transcription	Right Atrium	heart
4	chr14:77962600-77963800	Active TSS	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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