Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10003439	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10005908	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10009146	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs10011444	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10019035	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10520281	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1344621	0.94[EUR][1000 genomes]
rs1365622	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17362255	0.92[ASN][1000 genomes]
rs28382357	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28742064	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55690716	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62332188	0.85[EUR][1000 genomes]
rs6811079	0.85[EUR][1000 genomes]
rs6817069	0.84[EUR][1000 genomes]
rs6820915	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6842619	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6844275	0.85[EUR][1000 genomes]
rs7671048	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695663	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9998916	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv881376	chr4:175466101-175513812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175466600-175484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:175471600-175476600	Weak transcription	Stomach Mucosa	stomach
3	chr4:175473400-175476800	Weak transcription	Fetal Intestine Small	intestine
4	chr4:175473400-175478400	Weak transcription	Placenta	Placenta
5	chr4:175474000-175476000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:175474200-175475800	Enhancers	NHDF-Ad	bronchial
7	chr4:175474200-175475800	Enhancers	NHEK	skin
8	chr4:175474200-175476000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:175474600-175476000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:175474800-175476000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:175475000-175476000	Enhancers	HMEC	breast
12	chr4:175475400-175475600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:175475400-175475800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:175475400-175475800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:175475400-175475800	Enhancers	Fetal Stomach	stomach
16	chr4:175475400-175476000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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