Variant report

Variant	rs28784957
Chromosome Location	chr8:99620066-99620067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10092680	0.82[ASW][hapmap]
rs12681956	1.00[CHD][hapmap]
rs28842869	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99602800-99622800	Weak transcription	Esophagus	oesophagus
2	chr8:99603000-99635600	Weak transcription	Lung	lung
3	chr8:99606800-99635800	Weak transcription	Aorta	Aorta
4	chr8:99606800-99637400	Weak transcription	Ovary	ovary
5	chr8:99611800-99639800	Weak transcription	Small Intestine	intestine
6	chr8:99614400-99624800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:99614800-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:99617000-99635600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:99618000-99625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:99618400-99622800	Weak transcription	Fetal Intestine Small	intestine
11	chr8:99618400-99626400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:99618600-99622800	Weak transcription	Fetal Intestine Large	intestine
13	chr8:99619400-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:99619600-99625000	Weak transcription	K562	blood
15	chr8:99619800-99621600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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