Variant report

Variant	rs28785562
Chromosome Location	chr12:67641259-67641260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67639415..67642144-chr12:67665487..67667188,2	MCF-7	breast:
2	chr12:67638985..67641422-chr12:67661431..67664267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111530	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1680	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55646172	0.92[AFR][1000 genomes]
rs55718199	0.94[EUR][1000 genomes]
rs56009409	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56044711	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56256810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56956717	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57682356	0.88[EUR][1000 genomes]
rs58181317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58398438	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58559744	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58577936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58982313	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59402354	0.82[EUR][1000 genomes]
rs59826349	0.94[EUR][1000 genomes]
rs59842954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60104343	0.83[AFR][1000 genomes]
rs61237339	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61371870	0.88[EUR][1000 genomes]
rs61539332	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6581748	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7134160	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7300154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7301023	0.94[EUR][1000 genomes]
rs7308079	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7308322	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7313387	0.88[EUR][1000 genomes]
rs73318892	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320788	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324577	0.88[EUR][1000 genomes]
rs74098702	0.94[EUR][1000 genomes]
rs74100307	0.82[EUR][1000 genomes]
rs74100308	0.94[EUR][1000 genomes]
rs74100320	0.94[EUR][1000 genomes]
rs74100321	0.94[EUR][1000 genomes]
rs74100325	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74100337	0.94[EUR][1000 genomes]
rs7953592	0.88[EUR][1000 genomes]
rs7960660	0.88[EUR][1000 genomes]
rs7968351	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974384	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7977176	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv899218	chr12:67612129-67643840	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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