Variant report

rSNPs within LD-proxies of this variant (count:20)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
6	chr10:52867400-52876400	Weak transcription	Left Ventricle	heart
7	chr10:52867600-52871800	Enhancers	NHDF-Ad	bronchial
8	chr10:52867600-52876000	Weak transcription	Psoas Muscle	Psoas
9	chr10:52868200-52870800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:52868200-52871000	Enhancers	HMEC	breast
11	chr10:52868200-52871400	Enhancers	Osteobl	bone
12	chr10:52869800-52871800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:52869800-52872000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:52870200-52871000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:52870200-52871400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:52870200-52871400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:52870200-52871400	Enhancers	NH-A	brain
18	chr10:52870200-52871600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:52870200-52872000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:52870400-52871800	Enhancers	NHLF	lung
21	chr10:52870400-52873000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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