Variant report

Variant	rs2879546
Chromosome Location	chr10:52828638-52828639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10218858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822169	0.84[AFR][1000 genomes]
rs10995547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573698	0.82[EUR][1000 genomes]
rs16913603	0.82[EUR][1000 genomes]
rs16913709	0.82[EUR][1000 genomes]
rs2339676	0.85[EUR][1000 genomes]
rs2339677	0.82[EUR][1000 genomes]
rs2660201	0.83[AFR][1000 genomes]
rs2879548	0.85[EUR][1000 genomes]
rs4542348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5011544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58268608	0.82[EUR][1000 genomes]
rs58296033	0.85[EUR][1000 genomes]
rs59098547	0.85[EUR][1000 genomes]
rs7073617	0.83[AFR][1000 genomes]
rs73322648	0.83[ASN][1000 genomes]
rs73322650	0.83[ASN][1000 genomes]
rs73322654	1.00[ASN][1000 genomes]
rs73322683	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323803	0.85[EUR][1000 genomes]
rs73338483	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338488	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338490	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338492	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338494	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338499	0.85[EUR][1000 genomes]
rs73338502	0.85[EUR][1000 genomes]
rs73340468	0.85[EUR][1000 genomes]
rs73340469	0.85[EUR][1000 genomes]
rs73340484	0.85[EUR][1000 genomes]
rs7476372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476747	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414804	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52825200-52832600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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