Variant report

Variant	rs2879549
Chromosome Location	chr10:52775595-52775596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10128514	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015288	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761651	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761657	0.80[AMR][1000 genomes]
rs10822020	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10822032	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10822040	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10822045	0.80[AMR][1000 genomes]
rs10822095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822101	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995206	0.81[EUR][1000 genomes]
rs10995339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756803	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4041333	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479833	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479834	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479835	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479836	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479839	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7070037	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7070266	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076050	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7091997	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7093621	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7099130	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7100141	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900993	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7905728	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7916612	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:52768000-52782800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52772000-52782000	Weak transcription	Right Atrium	heart
4	chr10:52774000-52776000	Enhancers	Fetal Lung	lung
5	chr10:52774200-52775600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:52774200-52776000	Enhancers	Primary T cells from cord blood	blood
7	chr10:52774400-52776000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:52774800-52787400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:52775000-52776200	Enhancers	Fetal Stomach	stomach
10	chr10:52775400-52776000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:52775400-52776000	Enhancers	Aorta	Aorta
12	chr10:52775400-52782000	Weak transcription	Adipose Nuclei	Adipose

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