Variant report

Variant	rs28800775
Chromosome Location	chr9:15558334-15558335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10116904	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117524	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117803	0.83[AMR][1000 genomes]
rs10117823	0.83[AMR][1000 genomes]
rs10118595	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118675	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118719	0.94[EUR][1000 genomes]
rs10119257	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119931	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120171	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121911	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121971	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123084	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123651	0.83[AMR][1000 genomes]
rs10124655	0.92[EUR][1000 genomes]
rs10124718	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124746	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125713	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1041529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962054	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962061	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336383	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12336445	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337310	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344963	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348780	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350062	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352398	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12859	0.92[AMR][1000 genomes]
rs1509311	0.83[AMR][1000 genomes]
rs175762	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848583	0.83[AMR][1000 genomes]
rs1882939	0.83[EUR][1000 genomes]
rs202321	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2064030	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2202865	1.00[ASN][1000 genomes]
rs2221706	0.91[AMR][1000 genomes]
rs2382536	0.83[AMR][1000 genomes]
rs2665503	0.97[EUR][1000 genomes]
rs2665510	0.83[EUR][1000 genomes]
rs2665511	0.83[EUR][1000 genomes]
rs2665512	0.83[EUR][1000 genomes]
rs2665515	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2737840	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276434	1.00[ASN][1000 genomes]
rs276437	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276438	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276439	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276440	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276442	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276445	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276446	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276450	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276451	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276452	0.82[EUR][1000 genomes]
rs2777951	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2795123	0.83[EUR][1000 genomes]
rs2795124	0.83[EUR][1000 genomes]
rs2795125	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2795127	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2795128	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798717	0.83[AMR][1000 genomes]
rs2821525	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821529	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821530	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2821533	0.83[EUR][1000 genomes]
rs2821542	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821543	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821544	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449490	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497163	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610358	0.97[EUR][1000 genomes]
rs28659858	0.91[AMR][1000 genomes]
rs28735068	0.91[EUR][1000 genomes]
rs28796681	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28805077	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28808908	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844368	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28882210	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28893033	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119700	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122701	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3122705	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129711	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365710	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381205	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392627	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs398117	1.00[ASN][1000 genomes]
rs398178	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs399808	1.00[ASN][1000 genomes]
rs401393	1.00[ASN][1000 genomes]
rs413356	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs415157	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418153	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237140	0.91[AMR][1000 genomes]
rs424131	1.00[ASN][1000 genomes]
rs443563	0.91[EUR][1000 genomes]
rs4445326	0.83[AMR][1000 genomes]
rs592452	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474941	0.83[AMR][1000 genomes]
rs6474943	0.83[AMR][1000 genomes]
rs7021840	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741930	0.92[AMR][1000 genomes]
rs7852936	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796391	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811282	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909323	0.83[EUR][1000 genomes]
rs926154	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298729	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9406518	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15553800-15576200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15553800-15580600	Weak transcription	Ovary	ovary
3	chr9:15553800-15592600	Weak transcription	Left Ventricle	heart
4	chr9:15554000-15564400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:15554000-15590200	Weak transcription	Fetal Stomach	stomach
6	chr9:15554400-15579400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15554600-15563600	Weak transcription	Fetal Thymus	thymus
8	chr9:15554600-15580800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:15554800-15559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:15554800-15559600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:15554800-15560800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:15555200-15559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:15555600-15561600	Weak transcription	Thymus	Thymus

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