Variant report

Variant	rs288084
Chromosome Location	chr2:210428268-210428269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10204207	0.93[ASN][1000 genomes]
rs10207186	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12620654	0.88[ASN][1000 genomes]
rs12623006	0.83[EUR][1000 genomes]
rs12992342	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13419929	0.86[ASN][1000 genomes]
rs1396779	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1509465	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs169636	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2048250	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2663648	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2710486	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs288070	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs288071	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs288079	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288081	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288087	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288088	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288089	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs288091	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs288094	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs288096	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55703768	0.82[EUR][1000 genomes]
rs56023260	0.86[ASN][1000 genomes]
rs56164239	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56677957	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57781584	0.82[ASN][1000 genomes]
rs60120123	0.83[EUR][1000 genomes]
rs60497472	0.82[ASN][1000 genomes]
rs6722585	0.84[ASN][1000 genomes]
rs6726061	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73071034	0.83[ASN][1000 genomes]
rs7568260	0.83[ASN][1000 genomes]
rs7593381	0.84[ASN][1000 genomes]
rs9288410	0.81[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210410600-210430800	Weak transcription	Fetal Brain Female	brain
2	chr2:210415000-210429800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:210419400-210430800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210421400-210430800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:210425400-210430800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:210427000-210430400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:210428200-210428600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:210428200-210429600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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