Variant report

Variant	rs288096
Chromosome Location	chr2:210402536-210402537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10198751	0.88[CEU][hapmap]
rs10204207	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10207186	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11885999	0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs12613572	0.97[ASN][1000 genomes]
rs12620654	0.82[MEX][hapmap]
rs12621444	0.97[ASN][1000 genomes]
rs12623006	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13419929	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1509465	1.00[CEU][hapmap]
rs16843022	0.82[CEU][hapmap]
rs169636	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048250	1.00[CEU][hapmap]
rs2663648	1.00[CEU][hapmap]
rs2663659	0.91[CEU][hapmap]
rs2710486	1.00[CEU][hapmap]
rs288070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288073	0.84[EUR][1000 genomes]
rs288079	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs288081	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs288084	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs288087	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288088	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288089	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288091	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56164239	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56677957	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57114516	0.97[ASN][1000 genomes]
rs57383822	0.94[ASN][1000 genomes]
rs59883519	0.97[ASN][1000 genomes]
rs6722585	0.99[ASN][1000 genomes]
rs6726061	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs6752348	0.97[ASN][1000 genomes]
rs73071034	0.98[ASN][1000 genomes]
rs7568260	1.00[ASN][1000 genomes]
rs7593381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7594825	0.92[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs906831	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs9288410	1.00[CEU][hapmap];0.80[TSI][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210392000-210406000	Weak transcription	Fetal Brain Female	brain
2	chr2:210392400-210405400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210393400-210405400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:210397000-210406800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:210399000-210405600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:210401400-210405200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links