Variant report

Variant	rs2881423
Chromosome Location	chr8:107753831-107753832
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107738242..107740333-chr8:107752229..107754012,2	K562	blood:
2	chr8:107752763..107754351-chr8:107776992..107778956,3	K562	blood:
3	chr8:107748936..107750658-chr8:107752847..107755089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11988518	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11990338	0.82[ASN][1000 genomes]
rs11996457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12056528	0.85[ASN][1000 genomes]
rs12675956	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12676199	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12681427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12681916	0.90[ASN][1000 genomes]
rs1542644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101531	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3101532	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101533	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101534	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101538	0.89[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101539	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102431	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3102432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3102434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110429	0.82[ASN][1000 genomes]
rs3132806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3132807	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3134127	0.86[ASN][1000 genomes]
rs3134129	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983210	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7000202	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7817274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719600-107762400	Weak transcription	Lung	lung
3	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
4	chr8:107719600-107775200	Weak transcription	Gastric	stomach
5	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
6	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
9	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:107739000-107775200	Weak transcription	A549	lung
13	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
14	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
15	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:107740000-107775200	Weak transcription	Ovary	ovary
17	chr8:107740200-107754400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr8:107740200-107755400	Weak transcription	Thymus	Thymus
19	chr8:107740200-107767400	Weak transcription	K562	blood
20	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
21	chr8:107740400-107755200	Weak transcription	Brain Angular Gyrus	brain
22	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
23	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
24	chr8:107741600-107754400	Weak transcription	Fetal Brain Female	brain
25	chr8:107746000-107754600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:107747000-107756000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr8:107747000-107757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
29	chr8:107747200-107754400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:107747600-107757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:107748600-107754400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr8:107748800-107754400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr8:107748800-107754600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:107748800-107755400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:107749000-107761200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr8:107749400-107754400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr8:107749400-107756000	Weak transcription	NHDF-Ad	bronchial
40	chr8:107749400-107756200	Weak transcription	NH-A	brain
41	chr8:107749400-107756200	Weak transcription	Osteobl	bone
42	chr8:107749400-107775200	Weak transcription	HMEC	breast
43	chr8:107749600-107756600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr8:107749800-107754400	Weak transcription	Brain Anterior Caudate	brain
45	chr8:107749800-107760800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr8:107750200-107755000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr8:107750600-107754600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr8:107750600-107758600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr8:107751200-107754600	Strong transcription	HepG2	liver

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