Variant report

Variant	rs28826070
Chromosome Location	chr11:54801549-54801550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11825077	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11827274	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11828784	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1916367	1.00[EUR][1000 genomes]
rs2204231	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28752322	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28778070	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28801085	1.00[EUR][1000 genomes]
rs28805394	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28809233	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28822115	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28839871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28846177	0.98[EUR][1000 genomes]
rs28852151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28867852	0.97[EUR][1000 genomes]
rs28871886	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28897249	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4341558	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55637752	0.90[EUR][1000 genomes]
rs55663900	1.00[EUR][1000 genomes]
rs55693437	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55744313	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55899800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55956850	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56080803	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182790	1.00[EUR][1000 genomes]
rs56189573	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56190771	0.85[EUR][1000 genomes]
rs56234219	0.83[EUR][1000 genomes]
rs56242792	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56270386	0.80[EUR][1000 genomes]
rs56275259	1.00[EUR][1000 genomes]
rs56315215	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895804	1.00[EUR][1000 genomes]
rs61895808	1.00[EUR][1000 genomes]
rs61895809	0.95[EUR][1000 genomes]
rs61895817	1.00[EUR][1000 genomes]
rs61895818	1.00[EUR][1000 genomes]
rs61895825	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61895829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895830	1.00[EUR][1000 genomes]
rs61895831	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895832	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61895833	1.00[EUR][1000 genomes]
rs61895834	1.00[EUR][1000 genomes]
rs61895837	1.00[EUR][1000 genomes]
rs61895838	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895839	1.00[EUR][1000 genomes]
rs61895859	0.95[EUR][1000 genomes]
rs61898060	0.95[EUR][1000 genomes]
rs61898061	0.95[EUR][1000 genomes]
rs61898062	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61898065	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61898066	0.91[AMR][1000 genomes]
rs61898068	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61898069	0.90[EUR][1000 genomes]
rs61898073	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61898074	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61898075	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61898076	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61898077	0.85[EUR][1000 genomes]
rs61898112	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61898116	0.85[EUR][1000 genomes]
rs61898129	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61898130	0.83[EUR][1000 genomes]
rs61898132	0.85[EUR][1000 genomes]
rs61898133	0.81[AMR][1000 genomes]
rs61898135	0.91[AMR][1000 genomes]
rs61898136	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61898138	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61898139	0.83[EUR][1000 genomes]
rs61898140	0.83[EUR][1000 genomes]
rs61898141	0.83[EUR][1000 genomes]
rs61898142	0.83[EUR][1000 genomes]
rs61898145	0.85[EUR][1000 genomes]
rs61898148	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61898149	0.85[EUR][1000 genomes]
rs61898150	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9666022	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9666206	0.85[EUR][1000 genomes]
rs9666460	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9666612	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9667029	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv12589	chr11:54694268-55028303	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv821285	chr11:54694268-55028303	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv554610	chr11:54695707-54802721	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv554611	chr11:54695707-54836466	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv554612	chr11:54695707-54968423	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv554613	chr11:54695707-54970593	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv554614	chr11:54695707-54972854	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv554615	chr11:54695707-55026646	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv554616	chr11:54695707-55038478	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv554617	chr11:54695707-55058198	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv554618	chr11:54695707-55111584	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv554635	chr11:54696859-54802721	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv554655	chr11:54699533-54888433	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv554656	chr11:54700615-54961685	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv554657	chr11:54711990-54811997	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv554658	chr11:54711990-54885685	ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	nsv1053153	chr11:54720811-54907154	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1038993	chr11:54720811-54925400	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1054950	chr11:54720811-54931753	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1049068	chr11:54720811-54935242	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1035974	chr11:54720811-54935589	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1043503	chr11:54720811-54940342	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1049385	chr11:54720811-54976429	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv1043891	chr11:54720811-54978384	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv1047352	chr11:54720811-55011132	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv1039476	chr11:54720811-55036460	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv1044556	chr11:54720811-55039790	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv1048711	chr11:54720811-55048272	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv1045259	chr11:54720811-55051462	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
31	nsv1052399	chr11:54720811-55060520	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv1048402	chr11:54720811-55148163	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
33	nsv1039155	chr11:54720811-55156607	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv1042875	chr11:54720811-55191418	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
35	nsv1038336	chr11:54720811-55213281	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
37	nsv554659	chr11:54763698-54836466	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv554660	chr11:54763698-54863927	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv554661	chr11:54763698-54875038	ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	nsv1045742	chr11:54773881-54931753	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	nsv1041578	chr11:54773881-54935589	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	nsv1054501	chr11:54773881-54940342	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	nsv1050960	chr11:54773881-54978384	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	nsv1041628	chr11:54773881-55011132	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	nsv1050392	chr11:54773881-55039790	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
46	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
47	nsv554662	chr11:54776794-55103617	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:54794200-54802000	ZNF genes & repeats	Liver	Liver
2	chr11:54797000-54802000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr11:54800600-54811200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links