Variant report

Variant	rs28829720
Chromosome Location	chr14:72442843-72442844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10047915	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10129266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130235	1.00[AMR][1000 genomes]
rs10134070	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134883	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146194	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28410983	1.00[EUR][1000 genomes]
rs28417884	1.00[EUR][1000 genomes]
rs28702941	1.00[EUR][1000 genomes]
rs28776512	1.00[EUR][1000 genomes]
rs2877775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57027270	1.00[EUR][1000 genomes]
rs7150767	1.00[EUR][1000 genomes]
rs7151873	1.00[EUR][1000 genomes]
rs7151878	1.00[EUR][1000 genomes]
rs72625695	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72442800-72450200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72442800-72450200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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