Variant report

Variant	rs2882980
Chromosome Location	chr7:137973639-137973640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10246131	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10260172	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11487160	0.87[ASN][1000 genomes]
rs17361616	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17458992	0.94[CEU][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs2352565	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34905915	0.81[AMR][1000 genomes]
rs357365	0.85[ASN][1000 genomes]
rs35846266	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57933478	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59028843	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59448541	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs68106113	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs690426	0.85[ASN][1000 genomes]
rs7793404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029101	chr7:137952620-138005671	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517949	chr7:137962186-137992969	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137953000-137974000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:137970800-137979200	Weak transcription	Ovary	ovary
3	chr7:137971400-137979200	Weak transcription	HepG2	liver
4	chr7:137973200-137976200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:137973600-137974800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:137973600-137975000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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