Variant report

Variant	rs2883147
Chromosome Location	chr8:63883988-63883989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63883110..63885219-chr8:64022208..64024652,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10504361	0.87[AFR][1000 genomes]
rs11985884	0.88[AFR][1000 genomes]
rs11985904	0.87[AFR][1000 genomes]
rs11989852	0.83[AFR][1000 genomes]
rs11991808	1.00[EUR][1000 genomes]
rs11992253	0.88[AFR][1000 genomes]
rs11993022	0.88[AFR][1000 genomes]
rs11993344	1.00[EUR][1000 genomes]
rs1351350	1.00[EUR][1000 genomes]
rs1378519	1.00[EUR][1000 genomes]
rs1455577	1.00[EUR][1000 genomes]
rs1480117	1.00[EUR][1000 genomes]
rs1902233	0.83[AFR][1000 genomes]
rs1902234	0.85[AFR][1000 genomes]
rs2124294	0.83[AFR][1000 genomes]
rs2353363	0.91[AFR][1000 genomes]
rs2353364	0.91[AFR][1000 genomes]
rs2353365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2883148	0.88[AFR][1000 genomes]
rs4270960	1.00[EUR][1000 genomes]
rs4395892	0.84[AFR][1000 genomes]
rs4410897	0.80[AFR][1000 genomes]
rs4419801	0.87[AFR][1000 genomes]
rs56034470	0.88[AFR][1000 genomes]
rs56213868	0.88[AFR][1000 genomes]
rs56339102	0.85[AFR][1000 genomes]
rs57069084	0.87[AFR][1000 genomes]
rs57145420	1.00[EUR][1000 genomes]
rs57317205	1.00[EUR][1000 genomes]
rs58136897	1.00[EUR][1000 genomes]
rs58942648	0.88[AFR][1000 genomes]
rs60595425	1.00[EUR][1000 genomes]
rs60751452	0.88[AFR][1000 genomes]
rs60897253	0.88[AFR][1000 genomes]
rs61143666	1.00[EUR][1000 genomes]
rs61144659	1.00[EUR][1000 genomes]
rs61326296	0.90[AFR][1000 genomes]
rs62508107	0.84[AFR][1000 genomes]
rs62508109	0.88[AFR][1000 genomes]
rs62508110	0.88[AFR][1000 genomes]
rs62508111	0.88[AFR][1000 genomes]
rs62508113	0.87[AFR][1000 genomes]
rs6472063	0.88[AFR][1000 genomes]
rs66790008	0.88[AFR][1000 genomes]
rs6982424	1.00[EUR][1000 genomes]
rs6983219	0.88[AFR][1000 genomes]
rs6983643	0.88[AFR][1000 genomes]
rs6983864	0.83[AFR][1000 genomes]
rs6983896	0.82[AFR][1000 genomes]
rs6986007	1.00[EUR][1000 genomes]
rs6997520	0.83[AFR][1000 genomes]
rs7000002	1.00[EUR][1000 genomes]
rs7000089	1.00[EUR][1000 genomes]
rs7003391	1.00[EUR][1000 genomes]
rs7015120	0.85[AFR][1000 genomes]
rs7015302	0.88[AFR][1000 genomes]
rs73254921	1.00[EUR][1000 genomes]
rs73254933	1.00[EUR][1000 genomes]
rs73254954	1.00[EUR][1000 genomes]
rs73266757	1.00[EUR][1000 genomes]
rs73266758	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73266781	1.00[EUR][1000 genomes]
rs73268678	1.00[EUR][1000 genomes]
rs73268679	1.00[EUR][1000 genomes]
rs73268681	1.00[EUR][1000 genomes]
rs73270521	1.00[EUR][1000 genomes]
rs73270530	1.00[EUR][1000 genomes]
rs73270590	1.00[EUR][1000 genomes]
rs73272416	1.00[EUR][1000 genomes]
rs7823443	1.00[EUR][1000 genomes]
rs7831801	1.00[EUR][1000 genomes]
rs7834301	0.88[AFR][1000 genomes]
rs7837948	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain
2	chr8:63878000-63892000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:63880200-63888000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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