Variant report

Variant	rs28842532
Chromosome Location	chr15:76705468-76705469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16968200	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs283786	1.00[EUR][1000 genomes]
rs28528891	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56944949	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495203	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024107	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024112	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024114	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024115	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74026416	1.00[EUR][1000 genomes]
rs74026430	1.00[EUR][1000 genomes]
rs74026434	1.00[EUR][1000 genomes]
rs74026435	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9944271	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
2	chr15:76661000-76708600	Weak transcription	Brain Anterior Caudate	brain
3	chr15:76661200-76710800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:76666200-76706800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:76674600-76718400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:76682600-76713800	Weak transcription	Fetal Intestine Small	intestine
8	chr15:76684800-76718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:76693600-76720400	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:76695600-76711000	Weak transcription	Lung	lung
11	chr15:76695800-76705800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:76695800-76706000	Weak transcription	Fetal Intestine Large	intestine
13	chr15:76695800-76709800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:76695800-76726000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:76696600-76720600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:76697000-76710400	Weak transcription	Left Ventricle	heart
17	chr15:76697000-76711000	Weak transcription	Esophagus	oesophagus
18	chr15:76697000-76718400	Weak transcription	Ovary	ovary
19	chr15:76697000-76719200	Weak transcription	Primary T cells from cord blood	blood
20	chr15:76697000-76720800	Weak transcription	Aorta	Aorta
21	chr15:76697000-76722200	Weak transcription	Spleen	Spleen
22	chr15:76697000-76723400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:76697000-76724000	Weak transcription	Brain Substantia Nigra	brain
24	chr15:76697000-76724400	Weak transcription	Pancreas	Pancrea
25	chr15:76697000-76726000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:76697000-76726400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:76697200-76706000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:76697200-76706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:76697200-76720400	Weak transcription	Liver	Liver

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