Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1345384	0.86[AMR][1000 genomes]
rs1420516	0.86[AMR][1000 genomes]
rs1420517	0.86[AMR][1000 genomes]
rs1520634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1520646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1520647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1581334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1582351	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1851057	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1894935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2080425	0.84[EUR][1000 genomes]
rs2160468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4678701	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6550287	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6550288	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6550289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6550292	0.86[AMR][1000 genomes]
rs6799184	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803249	0.85[EUR][1000 genomes]
rs7624722	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7625714	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7625770	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7636733	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs918085	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519548	chr3:34683998-34718800	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv525435	chr3:34698297-34718800	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34717400-34718600	Enhancers	NH-A	brain
2	chr3:34717600-34718400	Enhancers	Fetal Heart	heart
3	chr3:34717800-34718200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:34717800-34718200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:34717800-34721600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:34718000-34718200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:34718000-34718400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:34718000-34718400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:34718000-34718400	Enhancers	A549	lung
10	chr3:34718000-34718600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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