Variant report

Variant	rs28845191
Chromosome Location	chr11:17081109-17081110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17080572..17084120-chr11:17094846..17097568,3	K562	blood:

Variant related genes	Relation type
ENSG00000201403	Chromatin interaction
ENSG00000221322	Chromatin interaction
ENSG00000272034	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11024132	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11024180	0.82[ASN][1000 genomes]
rs11600230	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603765	1.00[ASN][1000 genomes]
rs11605718	1.00[ASN][1000 genomes]
rs11605779	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11826970	0.82[ASN][1000 genomes]
rs11827341	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12417522	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12419179	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471980	1.00[ASN][1000 genomes]
rs16924899	1.00[ASN][1000 genomes]
rs16933823	1.00[ASN][1000 genomes]
rs16933827	1.00[ASN][1000 genomes]
rs16933873	1.00[ASN][1000 genomes]
rs1967077	1.00[ASN][1000 genomes]
rs1974527	1.00[ASN][1000 genomes]
rs2040859	1.00[ASN][1000 genomes]
rs35493302	1.00[ASN][1000 genomes]
rs55928651	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56254605	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57726107	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545597	1.00[ASN][1000 genomes]
rs60698184	1.00[ASN][1000 genomes]
rs61879670	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61879689	0.84[ASN][1000 genomes]
rs61879695	1.00[ASN][1000 genomes]
rs61879701	1.00[ASN][1000 genomes]
rs61881312	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72870837	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72870840	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7481457	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv971988	chr11:17068362-17084978	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood

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