Variant report

Variant	rs2884542
Chromosome Location	chr12:63413273-63413274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1026096	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506470	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249935	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12813083	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821413	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821849	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829134	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098568	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098575	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098581	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098689	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098779	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098789	1.00[ASN][1000 genomes]
rs17098794	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17098802	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1731661	1.00[ASN][1000 genomes]
rs17739095	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2464118	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2840070	1.00[ASN][1000 genomes]
rs34203667	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35910451	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67784802	1.00[ASN][1000 genomes]
rs67994077	1.00[ASN][1000 genomes]
rs699591	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs699593	1.00[ASN][1000 genomes]
rs699615	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699618	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs71450600	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465172	1.00[ASN][1000 genomes]
rs71465180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771974	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771976	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772538	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs772541	1.00[ASN][1000 genomes]
rs960592	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9971730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63411600-63416200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:63412200-63413400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:63412200-63414800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:63412400-63413600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:63412400-63414800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:63412600-63413400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:63412600-63413600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:63412800-63413600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:63412800-63414200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:63412800-63414600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:63412800-63414600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:63413000-63413400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:63413000-63413400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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