Variant report
| Variant | rs28852185 |
|---|---|
| Chromosome Location | chr2:213536906-213536907 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10171052 | 1.00[ASN][1000 genomes] |
| rs10179457 | 1.00[ASN][1000 genomes] |
| rs10179622 | 1.00[ASN][1000 genomes] |
| rs10185470 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10195898 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10204755 | 1.00[ASN][1000 genomes] |
| rs10210112 | 1.00[ASN][1000 genomes] |
| rs13384047 | 1.00[ASN][1000 genomes] |
| rs13384253 | 1.00[ASN][1000 genomes] |
| rs13400701 | 1.00[ASN][1000 genomes] |
| rs13401993 | 1.00[ASN][1000 genomes] |
| rs13402119 | 1.00[ASN][1000 genomes] |
| rs13404602 | 1.00[ASN][1000 genomes] |
| rs13404790 | 1.00[ASN][1000 genomes] |
| rs13405155 | 1.00[ASN][1000 genomes] |
| rs13418175 | 1.00[ASN][1000 genomes] |
| rs13418412 | 1.00[ASN][1000 genomes] |
| rs13418742 | 0.84[EUR][1000 genomes] |
| rs13424220 | 1.00[ASN][1000 genomes] |
| rs13424239 | 0.84[EUR][1000 genomes] |
| rs1987801 | 1.00[ASN][1000 genomes] |
| rs28860549 | 1.00[ASN][1000 genomes] |
| rs4331450 | 1.00[ASN][1000 genomes] |
| rs4574061 | 1.00[ASN][1000 genomes] |
| rs56159667 | 1.00[ASN][1000 genomes] |
| rs56314123 | 1.00[ASN][1000 genomes] |
| rs62187972 | 1.00[ASN][1000 genomes] |
| rs6435718 | 1.00[ASN][1000 genomes] |
| rs6435720 | 1.00[ASN][1000 genomes] |
| rs6720790 | 1.00[ASN][1000 genomes] |
| rs6754237 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72933024 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72933056 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72933076 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72949047 | 1.00[ASN][1000 genomes] |
| rs72949055 | 1.00[ASN][1000 genomes] |
| rs7591655 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:213531200-213547800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
