Variant report

Variant	rs28856331
Chromosome Location	chr7:102543763-102543764
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10241865	0.96[ASN][1000 genomes]
rs10242028	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10250490	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10271157	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10271184	0.88[ASN][1000 genomes]
rs10273725	0.88[ASN][1000 genomes]
rs10279449	0.84[ASN][1000 genomes]
rs1100046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11514917	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11978799	0.89[ASN][1000 genomes]
rs11981980	0.80[ASN][1000 genomes]
rs12537977	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12668434	0.84[ASN][1000 genomes]
rs13233521	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13242493	0.90[ASN][1000 genomes]
rs1541519	0.84[ASN][1000 genomes]
rs1608651	0.84[ASN][1000 genomes]
rs17136090	0.84[ASN][1000 genomes]
rs2190673	0.96[ASN][1000 genomes]
rs2228686	0.81[ASN][1000 genomes]
rs2411056	0.85[ASN][1000 genomes]
rs2411059	0.90[ASN][1000 genomes]
rs41501847	0.89[ASN][1000 genomes]
rs4296965	0.90[ASN][1000 genomes]
rs4620204	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4729860	0.85[ASN][1000 genomes]
rs56269620	0.89[ASN][1000 genomes]
rs59544295	0.86[ASN][1000 genomes]
rs59709436	0.86[ASN][1000 genomes]
rs6465876	0.90[ASN][1000 genomes]
rs6465878	0.89[ASN][1000 genomes]
rs6465880	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6945997	0.82[ASN][1000 genomes]
rs6947403	0.92[ASN][1000 genomes]
rs6953980	0.89[ASN][1000 genomes]
rs6960428	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7779145	0.86[ASN][1000 genomes]
rs7789252	0.84[ASN][1000 genomes]
rs7794668	0.92[ASN][1000 genomes]
rs7800548	0.89[ASN][1000 genomes]
rs7804322	0.86[ASN][1000 genomes]
rs847646	0.92[ASN][1000 genomes]
rs847648	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847649	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs847656	0.93[ASN][1000 genomes]
rs847658	0.92[ASN][1000 genomes]
rs865865	0.89[ASN][1000 genomes]
rs869332	0.84[ASN][1000 genomes]
rs955992	0.83[ASN][1000 genomes]
rs9718453	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv5880	chr7:102505158-102550471	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517000-102549600	Weak transcription	Gastric	stomach
2	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:102522600-102549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102538400-102553200	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:102539200-102551800	Weak transcription	Fetal Lung	lung
6	chr7:102539200-102553000	Weak transcription	Right Atrium	heart
7	chr7:102541600-102549000	Weak transcription	K562	blood

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