Variant report

Variant	rs28856407
Chromosome Location	chr6:77458823-77458824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10086051	0.86[ASN][1000 genomes]
rs10090516	0.82[ASN][1000 genomes]
rs10111877	0.91[ASN][1000 genomes]
rs12546033	0.86[ASN][1000 genomes]
rs1904813	0.87[ASN][1000 genomes]
rs1904814	0.87[ASN][1000 genomes]
rs1921713	0.89[ASN][1000 genomes]
rs1921716	0.91[ASN][1000 genomes]
rs1921728	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1921729	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2007002	0.85[EUR][1000 genomes]
rs2199887	0.91[ASN][1000 genomes]
rs2377070	0.83[ASN][1000 genomes]
rs2377286	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889546	0.91[ASN][1000 genomes]
rs34023595	0.91[ASN][1000 genomes]
rs34125536	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35525166	0.87[ASN][1000 genomes]
rs4736851	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4736853	0.83[ASN][1000 genomes]
rs4737097	0.88[ASN][1000 genomes]
rs4737098	0.91[ASN][1000 genomes]
rs7013290	0.87[EUR][1000 genomes]
rs7018190	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025439	chr6:77093795-77479689	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538320	chr6:77093795-77479689	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026054	chr6:77294100-77479689	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv886217	chr6:77415155-77490717	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv886218	chr6:77415155-77500526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2763938	chr6:77417470-77461073	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2757180	chr6:77418087-77476663	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2759444	chr6:77418087-77476663	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv5359	chr6:77428304-77469152	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1001714	chr6:77435844-77461638	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
15	nsv1026686	chr6:77436147-77461073	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
16	esv2761011	chr6:77436159-77461073	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
17	esv1812528	chr6:77436181-77460911	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
18	esv1849622	chr6:77436360-77461581	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
19	nsv1028754	chr6:77436520-77461073	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv1830477	chr6:77436695-77461919	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
21	nsv7926	chr6:77436849-77460973	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
22	esv2630920	chr6:77436878-77461596	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
23	nsv511900	chr6:77436965-77460444	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
24	nsv819255	chr6:77438254-77461121	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
25	nsv820506	chr6:77439028-77460962	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
26	esv10050	chr6:77439258-77460349	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
27	esv1811825	chr6:77439753-77460911	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
28	esv1815476	chr6:77439753-77461919	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
29	esv1817739	chr6:77439753-77461919	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
30	esv1829056	chr6:77439753-77461919	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
31	esv1848699	chr6:77439753-77461919	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
32	esv1849210	chr6:77439753-77461919	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
33	esv1831962	chr6:77439753-77468320	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv1018115	chr6:77439868-77461073	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
35	nsv1030490	chr6:77439868-77467919	Weak transcription Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv1017724	chr6:77439868-77468454	ZNF genes & repeats Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv1031654	chr6:77439868-77468626	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv1023909	chr6:77439868-77469084	Weak transcription ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv1815219	chr6:77440016-77461581	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
40	esv1811630	chr6:77440016-77465577	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
41	nsv1029002	chr6:77440818-77468626	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
42	nsv603797	chr6:77443417-77459678	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
43	nsv603798	chr6:77443417-77461188	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
44	nsv603802	chr6:77448731-77459678	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
45	nsv603804	chr6:77448847-77459678	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
46	nsv603805	chr6:77449699-77459678	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
47	esv3391366	chr6:77452282-77476828	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
48	esv3415838	chr6:77452282-77485905	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77452400-77470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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