Variant report

Variant	rs28858471
Chromosome Location	chr12:10899115-10899116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11053921	1.00[EUR][1000 genomes]
rs11053922	1.00[EUR][1000 genomes]
rs11053929	1.00[EUR][1000 genomes]
rs12300797	1.00[EUR][1000 genomes]
rs12302178	1.00[EUR][1000 genomes]
rs28470343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7301725	1.00[EUR][1000 genomes]
rs7314768	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73267972	1.00[EUR][1000 genomes]
rs9668523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10895000-10902600	Weak transcription	GM12878-XiMat	blood
2	chr12:10895200-10902200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:10895200-10902200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:10895800-10902400	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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