Variant report

Variant	rs2886845
Chromosome Location	chrX:74503592-74503593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11796750	1.00[YRI][hapmap]
rs12832571	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs1936917	1.00[YRI][hapmap]
rs4148831	1.00[MEX][hapmap];0.81[MKK][hapmap]
rs4892408	0.81[GIH][hapmap];0.82[MEX][hapmap]
rs4892580	0.83[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs5937369	0.83[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs5937967	1.00[MEX][hapmap];0.81[MKK][hapmap]
rs5938075	0.83[GIH][hapmap];0.82[MEX][hapmap]
rs5981832	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5981861	0.83[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs5981875	0.83[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs7052314	0.83[GIH][hapmap];0.82[MEX][hapmap]
rs7892016	0.82[CHB][hapmap]
rs9887743	0.83[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534085	chrX:74360310-74516106	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1067730	chrX:74463757-74592761	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv532879	chrX:74463757-74592761	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74495200-74528800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chrX:74495800-74527800	Weak transcription	Thymus	Thymus
3	chrX:74496000-74504600	Weak transcription	Left Ventricle	heart
4	chrX:74496200-74514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:74498800-74516400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chrX:74499000-74504600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chrX:74499400-74504200	Weak transcription	Right Atrium	heart
8	chrX:74499600-74504400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chrX:74501800-74503600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chrX:74502800-74504600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chrX:74502800-74505200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chrX:74503000-74504400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chrX:74503200-74506800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chrX:74503400-74503600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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