Variant report

Variant	rs28872549
Chromosome Location	chr5:98038140-98038141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10041609	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063587	0.86[AFR][1000 genomes]
rs10077523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479227	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479228	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479229	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357377	0.86[AFR][1000 genomes]
rs55827362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57794132	0.86[AFR][1000 genomes]
rs58603373	0.86[AFR][1000 genomes]
rs60606949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149563	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149585	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9327876	0.86[AFR][1000 genomes]
rs9632473	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98026000-98040000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98037600-98038200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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