Variant report

Variant	rs28876818
Chromosome Location	chr11:70887011-70887012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70885860..70888254-chr11:70892283..70894447,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10897725	0.88[EUR][1000 genomes]
rs10897726	0.88[EUR][1000 genomes]
rs11232300	0.82[EUR][1000 genomes]
rs11232301	0.81[EUR][1000 genomes]
rs11232304	0.81[EUR][1000 genomes]
rs12271307	0.86[EUR][1000 genomes]
rs12272223	0.84[EUR][1000 genomes]
rs12273513	0.81[EUR][1000 genomes]
rs12273863	0.81[EUR][1000 genomes]
rs12274896	0.82[EUR][1000 genomes]
rs12282822	0.86[EUR][1000 genomes]
rs12289383	0.81[EUR][1000 genomes]
rs17431746	0.81[EUR][1000 genomes]
rs28811899	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34402475	0.96[EUR][1000 genomes]
rs35136877	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245462	0.87[EUR][1000 genomes]
rs4304805	0.88[EUR][1000 genomes]
rs4334036	0.87[EUR][1000 genomes]
rs4348928	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944245	0.88[EUR][1000 genomes]
rs4944282	0.92[ASN][1000 genomes]
rs55664123	0.84[EUR][1000 genomes]
rs55726773	0.84[EUR][1000 genomes]
rs55988920	0.84[EUR][1000 genomes]
rs56035448	0.84[EUR][1000 genomes]
rs56144630	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56181437	0.96[EUR][1000 genomes]
rs56291131	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56341503	0.84[EUR][1000 genomes]
rs56393668	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58093994	0.84[EUR][1000 genomes]
rs59052115	0.94[EUR][1000 genomes]
rs60079515	0.94[EUR][1000 genomes]
rs60524701	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61582992	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66521164	0.84[EUR][1000 genomes]
rs7116150	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123898	0.86[EUR][1000 genomes]
rs7125114	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957115	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957676	0.82[EUR][1000 genomes]
rs72957677	0.82[EUR][1000 genomes]
rs72957679	0.82[EUR][1000 genomes]
rs72957686	0.83[EUR][1000 genomes]
rs72957688	0.83[EUR][1000 genomes]
rs72957690	0.84[EUR][1000 genomes]
rs72957699	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959503	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959507	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959509	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959517	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959521	0.96[EUR][1000 genomes]
rs72959524	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7931474	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932968	0.87[EUR][1000 genomes]
rs7933912	0.86[EUR][1000 genomes]
rs7945968	0.86[EUR][1000 genomes]
rs7949824	0.86[EUR][1000 genomes]
rs7950101	0.86[EUR][1000 genomes]
rs9888294	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70858200-70891000	Weak transcription	Gastric	stomach
2	chr11:70877400-70890200	Weak transcription	Liver	Liver
3	chr11:70880600-70887800	Weak transcription	A549	lung
4	chr11:70882600-70892200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:70885400-70889200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:70886000-70887200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:70886000-70887200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:70886000-70887400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr11:70886200-70887200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:70886200-70887200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:70886200-70887200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:70886200-70888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:70886400-70888000	Weak transcription	HepG2	liver
14	chr11:70886600-70891000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:70887000-70891000	Weak transcription	Pancreas	Pancrea

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