Variant report

Variant	rs2887862
Chromosome Location	chr2:210659026-210659027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10170708	0.93[YRI][hapmap]
rs16843914	0.85[YRI][hapmap]
rs2191916	0.83[AFR][1000 genomes]
rs2215626	0.93[YRI][hapmap]
rs6435539	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs7608699	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210638200-210661400	Weak transcription	Fetal Brain Female	brain
2	chr2:210638400-210660000	Weak transcription	Fetal Brain Male	brain
3	chr2:210651200-210662000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
5	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
6	chr2:210652800-210660200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210655200-210660800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:210656200-210660200	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210656400-210660800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:210657000-210660200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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