Variant report

Variant	rs2887881
Chromosome Location	chr2:211010986-211010987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:211009811..211011366-chr2:211033940..211036164,2	MCF-7	breast:
2	chr2:211010718..211013464-chr2:211035621..211037329,2	K562	blood:
3	chr2:211010256..211012532-chr2:211031341..211034097,2	K562	blood:

Variant related genes	Relation type
ENSG00000263530	Chromatin interaction
ENSG00000231294	Chromatin interaction
ENSG00000144445	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10048697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1111193	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1990513	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2080158	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2192323	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2243769	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2539868	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs263671	0.83[YRI][hapmap]
rs263677	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58282165	0.84[AFR][1000 genomes]
rs58931716	0.84[AFR][1000 genomes]
rs6435553	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063910	0.84[AFR][1000 genomes]
rs73063916	0.84[AFR][1000 genomes]
rs73063929	0.84[AFR][1000 genomes]
rs73063945	0.84[AFR][1000 genomes]
rs73063963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065813	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065817	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv875766	chr2:210996084-211033176	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210990600-211018200	Weak transcription	Fetal Heart	heart
2	chr2:210991000-211018200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:210991400-211018200	Weak transcription	HSMMtube	muscle
4	chr2:210991800-211011600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:210992400-211015000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:210994800-211012800	Weak transcription	Stomach Mucosa	stomach
7	chr2:210997200-211022000	Weak transcription	Psoas Muscle	Psoas
8	chr2:211002200-211031400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:211005400-211020800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:211005600-211021000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:211006200-211032000	Weak transcription	HUVEC	blood vessel
12	chr2:211007600-211018000	Weak transcription	HepG2	liver
13	chr2:211008000-211032000	Weak transcription	HSMM	muscle
14	chr2:211008200-211018200	Weak transcription	GM12878-XiMat	blood
15	chr2:211008600-211011000	ZNF genes & repeats	Fetal Lung	lung
16	chr2:211008600-211012400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr2:211008600-211018200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:211008800-211012200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:211008800-211013200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:211008800-211027200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:211009000-211011200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:211009000-211013200	Strong transcription	Primary B cells from cord blood	blood
23	chr2:211009000-211013200	Strong transcription	Fetal Thymus	thymus
24	chr2:211009200-211011800	Strong transcription	Liver	Liver
25	chr2:211009200-211012000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr2:211009200-211018200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr2:211009200-211027200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr2:211009400-211012000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:211009400-211012200	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr2:211009400-211012600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr2:211009400-211013200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:211009400-211013200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:211009600-211011000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:211009600-211011000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:211009600-211011000	ZNF genes & repeats	Aorta	Aorta
36	chr2:211009600-211011000	ZNF genes & repeats	Brain Germinal Matrix	brain
37	chr2:211009600-211011000	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr2:211009600-211011000	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr2:211009600-211011000	ZNF genes & repeats	Fetal Stomach	stomach
40	chr2:211009600-211011000	ZNF genes & repeats	Lung	lung
41	chr2:211009600-211011000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:211009600-211011000	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr2:211009600-211011000	ZNF genes & repeats	Spleen	Spleen
44	chr2:211009600-211011200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:211009600-211011200	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr2:211009600-211011400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr2:211009600-211012000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr2:211009600-211012000	Strong transcription	Adipose Nuclei	Adipose
49	chr2:211009600-211012000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:211009600-211012000	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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