Variant report

Variant	rs2888434
Chromosome Location	chr2:37465906-37465907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37464697..37467448-chr2:37467935..37469545,2	K562	blood:
2	chr2:37455370..37456889-chr2:37465153..37467746,2	MCF-7	breast:
3	chr2:37464823..37466486-chr2:37471416..37473912,2	K562	blood:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10176949	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10177176	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10182759	0.83[CEU][hapmap];0.87[AMR][1000 genomes]
rs10184179	0.92[CEU][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs10190959	0.96[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10209937	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1056021	0.87[ASW][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11124569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124574	0.87[ASW][hapmap];0.96[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1137437	0.96[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs1158218	0.81[ASW][hapmap];0.96[CEU][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1158219	0.81[ASW][hapmap];0.96[CEU][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11679617	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11680401	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11682607	0.85[EUR][1000 genomes]
rs11683872	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11685805	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11689794	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11893943	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12616151	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12618410	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13015451	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1477055	0.86[JPT][hapmap]
rs17020386	0.83[ASN][1000 genomes]
rs17038876	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs2041836	0.96[CEU][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2268990	0.85[EUR][1000 genomes]
rs2287093	0.96[CEU][hapmap]
rs2300884	0.86[JPT][hapmap]
rs2300893	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2373000	0.86[JPT][hapmap]
rs3213745	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34819784	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755195	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3770752	0.92[CEU][hapmap]
rs3770754	0.86[JPT][hapmap]
rs3770759	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670195	0.81[JPT][hapmap]
rs4670688	0.86[JPT][hapmap]
rs4670689	0.86[JPT][hapmap]
rs4998429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6743782	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74177070	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7570547	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7584565	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7589296	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs876462	0.96[CEU][hapmap]
rs9309004	0.96[CEU][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2888434	CEBPZ	cis	Nerve Tibial	GTEx
rs2888434	CEBPZ	cis	Esophagus Muscularis	GTEx
rs2888434	CEBPZ	cis	Esophagus Mucosa	GTEx
rs2888434	PRKD3	cis	lung	GTEx
rs2888434	CEBPZ	cis	Thyroid	GTEx
rs2888434	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs2888434	RP11-423P10.2	cis	Esophagus Muscularis	GTEx
rs2888434	CEBPZ	cis	cerebellum	SCAN
rs2888434	CEBPZ	cis	lymphoblastoid	seeQTL
rs2888434	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37468200	Weak transcription	Psoas Muscle	Psoas
2	chr2:37460000-37468600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:37460000-37471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
5	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
6	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:37460200-37466600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:37460200-37468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:37460200-37468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
11	chr2:37460400-37466000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:37460400-37466200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:37460400-37466200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:37460400-37467200	Weak transcription	Esophagus	oesophagus
15	chr2:37460400-37467200	Weak transcription	Pancreas	Pancrea
16	chr2:37460400-37467400	Weak transcription	NHDF-Ad	bronchial
17	chr2:37460400-37468000	Weak transcription	HUVEC	blood vessel
18	chr2:37460400-37468400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:37460400-37468400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:37460400-37468400	Weak transcription	NH-A	brain
21	chr2:37460400-37468600	Weak transcription	Brain Angular Gyrus	brain
22	chr2:37460400-37468600	Weak transcription	Brain Germinal Matrix	brain
23	chr2:37460400-37468800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:37460400-37468800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:37460400-37469000	Weak transcription	HMEC	breast
26	chr2:37460400-37470600	Weak transcription	Fetal Kidney	kidney
27	chr2:37460400-37471200	Weak transcription	Brain Hippocampus Middle	brain
28	chr2:37460400-37472200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:37460400-37472400	Weak transcription	Brain Substantia Nigra	brain
30	chr2:37460400-37476600	Weak transcription	Right Ventricle	heart
31	chr2:37460400-37481600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr2:37460400-37492200	Weak transcription	Fetal Heart	heart
33	chr2:37460400-37498600	Weak transcription	Gastric	stomach
34	chr2:37460600-37467800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr2:37460600-37468600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:37460600-37468600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr2:37460600-37468800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:37460600-37471200	Weak transcription	Fetal Brain Male	brain
39	chr2:37460600-37488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:37460600-37493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
42	chr2:37461000-37488200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:37461000-37489800	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr2:37461200-37467600	Strong transcription	Fetal Intestine Small	intestine
45	chr2:37461200-37467800	Strong transcription	Fetal Stomach	stomach
46	chr2:37461200-37468800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr2:37461200-37471400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr2:37461600-37467400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:37461800-37486800	Strong transcription	H1 Cell Line	embryonic stem cell

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