Variant report

Variant	rs28895958
Chromosome Location	chr8:48621144-48621145
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10086266	1.00[AMR][1000 genomes]
rs10093950	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102782	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10104074	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106803	0.89[AFR][1000 genomes]
rs10108990	0.91[AFR][1000 genomes]
rs10110049	1.00[AMR][1000 genomes]
rs10111963	0.81[AFR][1000 genomes]
rs11987727	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993708	1.00[AMR][1000 genomes]
rs11997023	0.94[AFR][1000 genomes]
rs28366397	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439682	0.81[AFR][1000 genomes]
rs28583978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587193	1.00[AMR][1000 genomes]
rs28603312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28683713	0.96[AFR][1000 genomes]
rs28812531	1.00[AMR][1000 genomes]
rs28897086	1.00[AMR][1000 genomes]
rs34142661	0.81[AFR][1000 genomes]
rs6980675	0.94[AFR][1000 genomes]
rs6982040	0.85[AFR][1000 genomes]
rs7010172	0.91[AFR][1000 genomes]
rs73677550	0.91[AFR][1000 genomes]
rs7821542	1.00[AMR][1000 genomes]
rs7823419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178240	0.81[AFR][1000 genomes]
rs8178253	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027043	chr8:48444306-48637900	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539596	chr8:48444306-48637900	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1803608	chr8:48506628-48874811	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1026287	chr8:48615720-48710849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48590600-48625200	Weak transcription	HepG2	liver
2	chr8:48593200-48624000	Weak transcription	Thymus	Thymus
3	chr8:48597000-48625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:48597200-48647200	Weak transcription	NHEK	skin
5	chr8:48597200-48647400	Weak transcription	HMEC	breast
6	chr8:48599200-48626600	Weak transcription	Fetal Kidney	kidney
7	chr8:48602800-48647800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:48604400-48648400	Weak transcription	Small Intestine	intestine
9	chr8:48605000-48625400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr8:48606400-48624400	Weak transcription	Psoas Muscle	Psoas
11	chr8:48606600-48624000	Weak transcription	Right Atrium	heart
12	chr8:48606800-48646400	Weak transcription	Fetal Heart	heart
13	chr8:48609200-48632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:48610400-48625200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:48610600-48624400	Weak transcription	HSMM	muscle
16	chr8:48610600-48625000	Weak transcription	Fetal Thymus	thymus
17	chr8:48610600-48625400	Weak transcription	Brain Germinal Matrix	brain
18	chr8:48610600-48625400	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:48610600-48625400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:48610800-48625400	Weak transcription	NHLF	lung
21	chr8:48611000-48625400	Weak transcription	Brain Angular Gyrus	brain
22	chr8:48611400-48625200	Weak transcription	Brain Substantia Nigra	brain
23	chr8:48611800-48625400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:48611800-48632200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:48612000-48625800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:48612000-48647400	Weak transcription	NH-A	brain
27	chr8:48612400-48625400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr8:48612400-48640000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:48612800-48621200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr8:48613000-48621400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:48613000-48625400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr8:48613200-48625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:48613600-48623400	Weak transcription	HUVEC	blood vessel
34	chr8:48613600-48632200	Weak transcription	Fetal Brain Female	brain
35	chr8:48613600-48636600	Weak transcription	NHDF-Ad	bronchial
36	chr8:48613600-48647200	Weak transcription	A549	lung
37	chr8:48613800-48625200	Weak transcription	Ovary	ovary
38	chr8:48613800-48625200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:48613800-48625600	Weak transcription	Brain Anterior Caudate	brain
40	chr8:48614200-48624000	Weak transcription	Osteobl	bone
41	chr8:48614200-48626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr8:48614600-48627400	Weak transcription	GM12878-XiMat	blood
43	chr8:48615000-48625000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr8:48615000-48625600	Weak transcription	Placenta	Placenta
45	chr8:48615400-48632600	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:48615600-48624400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:48615600-48624600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr8:48615600-48625200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:48615600-48625400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr8:48615600-48625400	Weak transcription	Aorta	Aorta

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