Variant report

Variant	rs2891001
Chromosome Location	chr9:15603676-15603677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10117524	0.85[EUR][1000 genomes]
rs10119257	0.85[EUR][1000 genomes]
rs10962061	0.82[EUR][1000 genomes]
rs1553727	0.89[AFR][1000 genomes]
rs175762	0.90[EUR][1000 genomes]
rs2202865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276434	0.86[AFR][1000 genomes]
rs276437	0.94[EUR][1000 genomes]
rs276438	0.91[EUR][1000 genomes]
rs276439	0.97[EUR][1000 genomes]
rs276445	0.90[EUR][1000 genomes]
rs276446	0.90[EUR][1000 genomes]
rs276450	0.84[EUR][1000 genomes]
rs276451	0.84[EUR][1000 genomes]
rs2821542	0.84[EUR][1000 genomes]
rs2821543	0.81[EUR][1000 genomes]
rs2821544	0.87[EUR][1000 genomes]
rs28449490	0.82[EUR][1000 genomes]
rs28735068	0.82[EUR][1000 genomes]
rs28805077	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3119700	0.87[EUR][1000 genomes]
rs3122701	0.84[EUR][1000 genomes]
rs3122705	0.94[EUR][1000 genomes]
rs3129711	0.84[EUR][1000 genomes]
rs365710	0.87[EUR][1000 genomes]
rs381205	0.84[EUR][1000 genomes]
rs398117	0.89[AFR][1000 genomes]
rs399808	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs401393	0.85[AFR][1000 genomes]
rs413356	0.94[EUR][1000 genomes]
rs415157	0.84[EUR][1000 genomes]
rs418153	0.90[EUR][1000 genomes]
rs424131	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs443563	0.87[EUR][1000 genomes]
rs592452	0.84[EUR][1000 genomes]
rs796391	0.84[EUR][1000 genomes]
rs811282	0.87[EUR][1000 genomes]
rs9406518	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028357	chr9:15565670-15622556	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv613654	chr9:15601971-15638364	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15587000-15620400	Weak transcription	Pancreas	Pancrea
2	chr9:15589200-15609800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:15589400-15610600	Weak transcription	Thymus	Thymus
4	chr9:15592800-15614000	Weak transcription	Left Ventricle	heart
5	chr9:15599000-15617800	Weak transcription	Aorta	Aorta
6	chr9:15599600-15606200	Weak transcription	Fetal Lung	lung
7	chr9:15600200-15605800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:15600200-15614400	Weak transcription	Gastric	stomach
9	chr9:15600600-15617600	Weak transcription	Fetal Stomach	stomach
10	chr9:15601000-15620000	Weak transcription	Ovary	ovary
11	chr9:15601200-15608000	Weak transcription	Fetal Thymus	thymus
12	chr9:15601200-15614000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:15601400-15606000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:15601600-15605800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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