Variant report

Variant	rs2891112
Chromosome Location	chr9:17750946-17750947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10119271	0.87[EUR][1000 genomes]
rs10810847	0.84[ASN][1000 genomes]
rs12377594	0.95[ASN][1000 genomes]
rs1886589	0.85[ASN][1000 genomes]
rs2031456	0.87[EUR][1000 genomes]
rs2209426	0.85[AFR][1000 genomes]
rs2209427	0.85[AFR][1000 genomes]
rs2209429	0.85[AFR][1000 genomes]
rs2296367	0.81[ASN][1000 genomes]
rs2383046	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2383047	0.84[AFR][1000 genomes]
rs3808675	0.89[ASN][1000 genomes]
rs4302941	0.83[ASN][1000 genomes]
rs4961591	0.83[EUR][1000 genomes]
rs4961593	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961594	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961595	0.85[AFR][1000 genomes]
rs7026725	0.85[EUR][1000 genomes]
rs7032090	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17750800-17751800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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