Variant report

Variant	rs2891786
Chromosome Location	chr7:104558939-104558940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231439	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10245078	0.95[EUR][1000 genomes]
rs10251106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333765	0.95[EUR][1000 genomes]
rs2428161	0.86[JPT][hapmap]
rs4730060	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59869531	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60551932	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949656	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs740068	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7795893	0.91[JPT][hapmap]
rs886145	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104552600-104563400	Weak transcription	Pancreas	Pancrea
2	chr7:104554600-104562800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104555200-104563400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:104555200-104563600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:104556000-104562600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:104558000-104559000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:104558200-104559200	Genic enhancers	Fetal Kidney	kidney
8	chr7:104558400-104571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:104558600-104559000	Enhancers	Fetal Intestine Large	intestine
10	chr7:104558600-104559200	Enhancers	GM12878-XiMat	blood
11	chr7:104558800-104559200	Genic enhancers	Fetal Intestine Small	intestine
12	chr7:104558800-104561800	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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