Variant report

Variant	rs28932171
Chromosome Location	chr10:61831290-61831291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61826151..61827920-chr10:61829843..61831812,2	K562	blood:
2	chr10:61622142..61625052-chr10:61830945..61832691,2	K562	blood:
3	chr10:61828300..61831664-chr10:61831682..61834360,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509122	1.00[GIH][hapmap]
rs11593500	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11593609	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11599164	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17207897	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17208576	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17208611	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17802184	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17802208	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17802232	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2393595	1.00[GIH][hapmap];0.86[MEX][hapmap]
rs2393610	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4480489	0.84[EUR][1000 genomes]
rs72818480	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72818490	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7917800	1.00[GIH][hapmap];0.86[MEX][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
2	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
3	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
4	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:61801800-61832600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:61803600-61835000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:61803800-61834200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:61803800-61835000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:61804000-61835000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:61805000-61835400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:61805400-61834200	Weak transcription	Brain Anterior Caudate	brain
13	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
15	chr10:61806200-61835000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:61808000-61833400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:61808400-61834400	Weak transcription	Fetal Heart	heart
18	chr10:61808400-61835000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:61810400-61834800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:61813600-61834800	Weak transcription	Liver	Liver
21	chr10:61813600-61837600	Weak transcription	Lung	lung
22	chr10:61814000-61832600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:61814000-61833600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:61814400-61848800	Weak transcription	Gastric	stomach
25	chr10:61815000-61834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:61815000-61835200	Weak transcription	Ovary	ovary
27	chr10:61815800-61834200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:61815800-61835000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:61816000-61834000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:61817200-61834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr10:61817600-61842600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:61818200-61848000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:61819600-61833600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:61819600-61835200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:61819800-61833800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:61819800-61833800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:61820800-61845600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:61821000-61831400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:61822800-61836400	Strong transcription	Placenta	Placenta
42	chr10:61823400-61833600	Weak transcription	Aorta	Aorta
43	chr10:61823600-61835000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:61824200-61856800	Weak transcription	NH-A	brain
45	chr10:61825000-61849000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:61825600-61836800	Weak transcription	Brain Germinal Matrix	brain
47	chr10:61826400-61832200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:61826400-61835200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:61826600-61836200	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:61826800-61834800	Weak transcription	Esophagus	oesophagus

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