Variant report

Variant	rs28949576
Chromosome Location	chr7:126854690-126854691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:126854672-126854722	GM12878	blood:	n/a
2	chr7:126854672-126854722	SKMC	muscle:	n/a
3	chr7:126854672-126854722	HCPEpiC	choroid plexus:	n/a
4	chr7:126854672-126854722	SK-N-SH_RA	brain:	n/a
5	chr7:126854672-126854722	CMK	blood:	n/a
6	chr7:126854672-126854722	HIPEpiC	eye:	n/a
7	chr7:126854672-126854722	AG04450	lung:	fetal
8	chr7:126854672-126854722	AG04449	skin:	fetal
9	chr7:126854672-126854722	HAEpiC	amniotic membrane:	n/a
10	chr7:126854672-126854722	MCF10A-Er-Src	breast:	n/a
11	chr7:126854672-126854722	HEK293	kidney:	embryo
12	chr7:126854672-126854722	SK-N-MC	brain:	n/a
13	chr7:126854672-126854722	GM06990	blood:	n/a
14	chr7:126854672-126854722	BE2_C	brain:	n/a
15	chr7:126854672-126854722	ProgFib	skin:	n/a
16	chr7:126854672-126854722	HCF	heart:	n/a
17	chr7:126854672-126854722	PFSK-1	brain:	n/a
18	chr7:126854672-126854722	AG10803	skin:	n/a
19	chr7:126854672-126854722	AG09319	gingival:	n/a
20	chr7:126854672-126854722	SK-N-SH	brain:	n/a
21	chr7:126854672-126854722	MCF-7	breast:	n/a
22	chr7:126854672-126854722	IMR90	lung:	fetal
23	chr7:126854672-126854722	HRCEpiC	kidney:	n/a
24	chr7:126854672-126854722	HMEC	breast:	n/a
25	chr7:126854672-126854722	HCT-116	colon:	n/a
26	chr7:126854672-126854722	NH-A	brain:	n/a
27	chr7:126854672-126854722	PrEC	prostate:	n/a
28	chr7:126854672-126854722	RPTEC	kidney:	n/a
29	chr7:126854672-126854722	LNCaP	prostate:	n/a
30	chr7:126854672-126854722	HNPCEpiC	eye:	n/a
31	chr7:126854672-126854722	HepG2	liver:	n/a
32	chr7:126854672-126854722	NHBE	bronchial:	n/a
33	chr7:126854672-126854722	Hepatocyte	liver:	n/a
34	chr7:126854672-126854722	ECC-1	luminal epithelium:	n/a
35	chr7:126854672-126854722	AoSMC	blood vessel:	n/a
36	chr7:126854672-126854722	GM12891	blood:	n/a
37	chr7:126854672-126854722	HCM	heart:	n/a
38	chr7:126854672-126854722	AG09309	skin:	n/a
39	chr7:126854672-126854722	PANC-1	pancreas:	n/a
40	chr7:126854672-126854722	HEEpiC	esophagus:	n/a
41	chr7:126854672-126854722	NT2-D1	testis:	n/a
42	chr7:126854672-126854722	Jurkat	blood:	n/a
43	chr7:126854672-126854722	Hela-S3	cervix:	n/a
44	chr7:126854672-126854722	T-47D	breast:	n/a
45	chr7:126854672-126854722	HRPEpiC	eye:	n/a
46	chr7:126854672-126854722	U87	brain:	n/a
47	chr7:126854672-126854722	HRE	kidney:	n/a
48	chr7:126854672-126854722	ovcar-3	ovarian:	n/a
49	chr7:126854672-126854722	A549	lung:	n/a
50	chr7:126854672-126854722	NB4	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000236340	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1894730	1.00[JPT][hapmap]
rs28951991	1.00[JPT][hapmap]
rs28952009	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889190	chr7:126841090-126856057	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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