Variant report

Variant	rs2895663
Chromosome Location	chr1:194013060-194013061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10157295	0.82[EUR][1000 genomes]
rs10733081	0.85[EUR][1000 genomes]
rs10921491	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10921495	0.91[ASN][1000 genomes]
rs12124021	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372643	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442421	0.83[EUR][1000 genomes]
rs2584257	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs509469	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs511374	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs534209	0.81[EUR][1000 genomes]
rs624023	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs627525	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs634899	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs637225	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs651794	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs665903	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6672135	0.85[EUR][1000 genomes]
rs685287	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72745140	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7417488	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9783003	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9943099	0.86[EUR][1000 genomes]
rs9943193	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9943194	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194009200-194013800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:194009400-194013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:194010000-194013200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:194010200-194013600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:194010200-194013600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:194010200-194014000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:194010200-194020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:194010600-194013200	Weak transcription	Primary T cells from cord blood	blood
9	chr1:194010600-194013200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:194012800-194014400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:194013000-194014600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:194013000-194015200	Enhancers	NHEK	skin

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