Variant report

Variant	rs2896876
Chromosome Location	chrX:31187896-31187897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12391957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs12557265	1.00[CEU][hapmap]
rs12557283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs12687954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs1484854	1.00[CEU][hapmap]
rs1484855	0.83[CEU][hapmap]
rs1921385	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1921386	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[TSI][hapmap]
rs1921388	0.84[CHB][hapmap];0.81[CHD][hapmap];1.00[TSI][hapmap]
rs1921392	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1921394	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1921395	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1921710	0.84[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap]
rs2178538	1.00[CEU][hapmap]
rs2404495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs2404496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs2404497	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs3747385	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs3788887	0.91[CEU][hapmap]
rs426228	0.82[CEU][hapmap]
rs436628	0.83[CEU][hapmap]
rs4397574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4829210	1.00[CEU][hapmap]
rs5926987	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs5927688	0.86[CHB][hapmap]
rs5972322	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs5972325	0.90[CEU][hapmap]
rs5972328	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs6527061	1.00[CEU][hapmap]
rs6527062	1.00[CEU][hapmap]
rs6653848	1.00[CEU][hapmap]
rs7057738	1.00[CEU][hapmap]
rs9988310	0.91[CEU][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31134000-31188200	Weak transcription	Aorta	Aorta
2	chrX:31140200-31227600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:31140600-31206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chrX:31142000-31236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chrX:31156800-31224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chrX:31161800-31199800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chrX:31163000-31209000	Weak transcription	Ovary	ovary
8	chrX:31164600-31188000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chrX:31164600-31196000	Weak transcription	Left Ventricle	heart
10	chrX:31164800-31189600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chrX:31165000-31203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chrX:31166000-31196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:31173600-31193600	Strong transcription	Hela-S3	cervix
14	chrX:31177800-31202800	Weak transcription	Brain Angular Gyrus	brain
15	chrX:31182000-31227000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chrX:31183000-31199800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chrX:31184400-31197200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chrX:31184800-31188200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chrX:31184800-31190400	Weak transcription	HepG2	liver
20	chrX:31185000-31190200	Strong transcription	Liver	Liver
21	chrX:31185000-31200600	Weak transcription	Pancreas	Pancrea
22	chrX:31185800-31189200	Weak transcription	Brain Cingulate Gyrus	brain
23	chrX:31186000-31189200	Enhancers	Primary B cells from peripheral blood	blood
24	chrX:31186400-31196400	Weak transcription	HSMMtube	muscle
25	chrX:31186800-31201800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chrX:31186800-31203200	Weak transcription	Fetal Muscle Leg	muscle
27	chrX:31186800-31217600	Weak transcription	Fetal Intestine Small	intestine
28	chrX:31187000-31196000	Weak transcription	Adipose Nuclei	Adipose
29	chrX:31187800-31195400	Weak transcription	GM12878-XiMat	blood

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