Variant report

Variant	rs2898261
Chromosome Location	chr8:10958539-10958540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11991118	0.81[MEX][hapmap]
rs2409689	0.81[MEX][hapmap]
rs2409691	0.80[MEX][hapmap]
rs6980856	0.81[MEX][hapmap]
rs7460507	0.95[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Eosinophilic esophagitis	25017104	GWAS catalog

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2898261	PRSS55	cis	cerebellum	SCAN
rs2898261	MFHAS1	cis	cerebellum	SCAN
rs2898261	FLJ10661	cis	cerebellum	SCAN
rs2898261	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs2898261	CTSB	cis	cerebellum	SCAN
rs2898261	TDH	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10950600-10965000	Weak transcription	Gastric	stomach
2	chr8:10954400-10959200	Weak transcription	Pancreas	Pancrea
3	chr8:10955200-10968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:10956800-10964800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:10957200-10964800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:10957600-10958600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr8:10957600-10958600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:10957800-10958600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:10957800-10958600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:10958000-10958600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:10958000-10958600	Enhancers	Fetal Thymus	thymus
12	chr8:10958200-10958600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:10958200-10965000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr8:10958200-10967200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:10958200-10970200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:10958400-10965200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:10958400-10974800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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