Variant report

Variant	rs2900568
Chromosome Location	chr9:116689758-116689759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116646332..116648857-chr9:116689708..116691709,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10122390	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10123606	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10513222	0.83[EUR][1000 genomes]
rs10817532	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982007	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12343628	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13290326	0.97[ASN][1000 genomes]
rs1330169	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1888161	0.80[ASN][1000 genomes]
rs2183364	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418259	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900569	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35189176	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4979296	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4979297	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7026176	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7029830	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7047895	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7852787	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7853127	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs871806	0.96[ASN][1000 genomes]
rs871808	0.96[ASN][1000 genomes]
rs882980	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs944180	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9942970	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942975	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:116675800-116691800	Weak transcription	Lung	lung
4	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
5	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:116684800-116690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:116684800-116690800	Weak transcription	Osteobl	bone
8	chr9:116686000-116691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:116686000-116692000	Weak transcription	Fetal Heart	heart
10	chr9:116689400-116690000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:116689400-116690200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr9:116689400-116690800	ZNF genes & repeats	Fetal Lung	lung
13	chr9:116689600-116689800	Enhancers	HUVEC	blood vessel
14	chr9:116689600-116691400	ZNF genes & repeats	HSMM	muscle
15	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney

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