Variant report

Variant	rs2900571
Chromosome Location	chr9:116717138-116717139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116714888..116717726-chr9:116720128..116722306,2	K562	blood:
2	chr9:116714751..116717397-chr9:116717561..116719359,3	MCF-7	breast:
3	chr9:116716226..116718549-chr9:116720806..116723650,2	K562	blood:
4	chr9:116715151..116717735-chr9:116720132..116722087,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10119978	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10448275	0.82[CEU][hapmap]
rs10448276	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739396	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759664	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10759665	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10759666	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10817537	0.90[ASN][1000 genomes]
rs10817539	0.82[CEU][hapmap]
rs10817541	0.84[CEU][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10982009	0.91[ASN][1000 genomes]
rs10982015	0.82[CHB][hapmap];0.99[ASN][1000 genomes]
rs10982017	0.84[CEU][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs12551141	0.95[CHB][hapmap]
rs1330166	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536962	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1536965	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs1536966	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1544102	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1888161	0.82[CEU][hapmap]
rs2026143	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2065184	0.82[YRI][hapmap]
rs2418260	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2418261	0.90[ASN][1000 genomes]
rs2761688	0.93[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2773396	0.92[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2900570	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4979298	0.95[CHB][hapmap]
rs4979307	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7032101	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7038501	0.89[YRI][hapmap]
rs7046776	0.89[CEU][hapmap]
rs7867998	0.82[CEU][hapmap]
rs7869027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs814680	0.89[CEU][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs814686	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs814696	0.96[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs871806	0.84[CEU][hapmap]
rs871808	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116692000-116719400	Weak transcription	HMEC	breast
2	chr9:116692400-116717200	Weak transcription	A549	lung
3	chr9:116696200-116719800	Weak transcription	Gastric	stomach
4	chr9:116703600-116719800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:116709000-116720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:116710400-116719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:116710800-116723000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:116712000-116719800	Weak transcription	Fetal Intestine Small	intestine
10	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
11	chr9:116713000-116717400	Weak transcription	Fetal Stomach	stomach
12	chr9:116713000-116719400	Weak transcription	Stomach Mucosa	stomach
13	chr9:116713200-116719800	Weak transcription	Spleen	Spleen
14	chr9:116713400-116719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:116714400-116721200	Enhancers	NHDF-Ad	bronchial
16	chr9:116714600-116717200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:116714600-116717200	Enhancers	HSMMtube	muscle
18	chr9:116714600-116717400	Enhancers	HSMM	muscle
19	chr9:116714600-116719200	Enhancers	NH-A	brain
20	chr9:116714600-116719600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:116714600-116720400	Enhancers	Osteobl	bone
22	chr9:116714600-116721600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:116714600-116722400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:116714800-116717400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:116715000-116721000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:116715000-116721200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:116715400-116718000	Enhancers	NHLF	lung
28	chr9:116716000-116717200	Enhancers	Left Ventricle	heart
29	chr9:116716000-116717200	Enhancers	Lung	lung
30	chr9:116716000-116717600	Enhancers	Ovary	ovary
31	chr9:116716000-116718800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:116716000-116718800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:116716000-116720800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:116716200-116717200	Enhancers	Right Atrium	heart
35	chr9:116716200-116717400	Enhancers	Right Ventricle	heart
36	chr9:116716200-116717800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr9:116716200-116718200	Flanking Active TSS	HUVEC	blood vessel
38	chr9:116716200-116718800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr9:116716200-116730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:116716400-116717400	Enhancers	Aorta	Aorta
41	chr9:116716400-116717600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr9:116716400-116719800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:116716600-116717600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr9:116716600-116719000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr9:116716600-116720600	Enhancers	Fetal Kidney	kidney
46	chr9:116716800-116717200	Enhancers	Pancreas	Pancrea
47	chr9:116716800-116717400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:116716800-116717600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:116716800-116717600	Bivalent Enhancer	Placenta	Placenta
50	chr9:116716800-116717800	Enhancers	Fetal Muscle Leg	muscle

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