Variant report

Variant	rs2901123
Chromosome Location	chr10:119120100-119120101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10082478	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10787767	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10787768	0.83[AMR][1000 genomes]
rs10787769	0.86[AMR][1000 genomes]
rs10787771	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10886058	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10886061	0.85[ASN][1000 genomes]
rs10886062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10886064	0.85[ASN][1000 genomes]
rs10886065	0.81[ASN][1000 genomes]
rs11197957	0.83[AMR][1000 genomes]
rs11197960	0.85[ASN][1000 genomes]
rs11197961	0.86[AMR][1000 genomes]
rs11197968	0.85[ASN][1000 genomes]
rs11197969	0.85[ASN][1000 genomes]
rs11197970	0.85[ASN][1000 genomes]
rs11197974	0.83[ASN][1000 genomes]
rs11197975	0.82[ASN][1000 genomes]
rs11197976	0.82[ASN][1000 genomes]
rs11197977	0.80[ASN][1000 genomes]
rs11197981	0.81[ASN][1000 genomes]
rs12243133	0.81[ASN][1000 genomes]
rs12243628	0.85[ASN][1000 genomes]
rs12249877	0.86[AMR][1000 genomes]
rs12256994	0.81[ASN][1000 genomes]
rs12263512	0.85[ASN][1000 genomes]
rs12265713	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12269460	0.85[ASN][1000 genomes]
rs12413507	0.84[ASN][1000 genomes]
rs12414644	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12569963	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571779	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12573009	0.84[ASN][1000 genomes]
rs12573252	0.86[AMR][1000 genomes]
rs1468563	0.85[ASN][1000 genomes]
rs1860407	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935166	0.85[ASN][1000 genomes]
rs1935167	0.85[ASN][1000 genomes]
rs2153714	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2255321	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2255367	0.84[ASN][1000 genomes]
rs2275670	0.82[ASN][1000 genomes]
rs2420457	0.83[ASN][1000 genomes]
rs2429505	0.84[ASN][1000 genomes]
rs2532789	0.84[ASN][1000 genomes]
rs2532792	0.84[ASN][1000 genomes]
rs2532793	0.84[ASN][1000 genomes]
rs2532795	0.84[ASN][1000 genomes]
rs2532796	0.84[ASN][1000 genomes]
rs2532809	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532844	0.84[ASN][1000 genomes]
rs2794416	0.84[ASN][1000 genomes]
rs34247425	0.85[ASN][1000 genomes]
rs363227	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363228	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363229	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363238	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363271	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363272	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363303	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3814229	0.83[ASN][1000 genomes]
rs3814230	0.83[ASN][1000 genomes]
rs4751621	0.83[AMR][1000 genomes]
rs4751622	0.83[AMR][1000 genomes]
rs4751623	0.85[ASN][1000 genomes]
rs4752048	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752051	0.83[AMR][1000 genomes]
rs4752052	0.83[AMR][1000 genomes]
rs4752054	0.84[ASN][1000 genomes]
rs4752056	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585431	0.84[ASN][1000 genomes]
rs7070594	0.82[ASN][1000 genomes]
rs7072027	0.85[ASN][1000 genomes]
rs7072785	0.84[ASN][1000 genomes]
rs7086651	0.82[ASN][1000 genomes]
rs7088401	0.85[ASN][1000 genomes]
rs7090219	0.86[AMR][1000 genomes]
rs72825515	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72825530	0.84[ASN][1000 genomes]
rs7901203	0.85[ASN][1000 genomes]
rs887341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs979992	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2901123	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:119111000-119124600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:119112600-119123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:119112600-119132800	Weak transcription	Gastric	stomach
10	chr10:119114000-119123200	Weak transcription	Small Intestine	intestine
11	chr10:119114200-119120800	Weak transcription	GM12878-XiMat	blood
12	chr10:119114200-119122600	Weak transcription	Brain Germinal Matrix	brain
13	chr10:119114200-119128200	Weak transcription	Thymus	Thymus
14	chr10:119114800-119123400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr10:119115200-119122000	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:119115200-119122400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:119115200-119122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:119115200-119122600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:119115200-119122600	Weak transcription	Primary B cells from cord blood	blood
20	chr10:119115200-119123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:119115200-119126600	Weak transcription	Fetal Thymus	thymus
22	chr10:119115400-119120400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:119115400-119120600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:119115400-119122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:119115400-119123200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:119115600-119122600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:119116200-119121000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:119116200-119125000	Weak transcription	Dnd41	blood
29	chr10:119117000-119123600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:119118600-119121600	Enhancers	Fetal Intestine Small	intestine
31	chr10:119119000-119120200	Enhancers	Fetal Intestine Large	intestine
32	chr10:119119000-119120600	Weak transcription	Ovary	ovary
33	chr10:119119200-119120200	Flanking Active TSS	A549	lung
34	chr10:119119200-119123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:119119200-119124600	Enhancers	HMEC	breast
36	chr10:119119200-119126000	Weak transcription	Pancreas	Pancrea
37	chr10:119119200-119127200	Enhancers	NHEK	skin
38	chr10:119119400-119121400	Enhancers	Hela-S3	cervix
39	chr10:119119400-119122800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:119119400-119123000	Enhancers	HUVEC	blood vessel
41	chr10:119119400-119123600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:119119400-119124000	Enhancers	HSMM	muscle
43	chr10:119119400-119124600	Enhancers	NH-A	brain
44	chr10:119119400-119125400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr10:119119600-119120200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr10:119119600-119120200	Enhancers	Duodenum Mucosa	Duodenum
47	chr10:119119600-119120400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:119119600-119120400	Enhancers	HSMMtube	muscle
49	chr10:119119600-119120800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr10:119119600-119121600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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