Variant report

Variant	rs2901534
Chromosome Location	chr11:35364569-35364570
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35360058..35364651-chr11:35365186..35370074,5	K562	blood:
2	chr11:35360349..35364651-chr11:35366832..35371612,5	K562	blood:
3	chr11:35353606..35355179-chr11:35363143..35365383,2	MCF-7	breast:
4	chr11:35358795..35361684-chr11:35361699..35364606,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10836373	0.93[EUR][1000 genomes]
rs11033071	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033083	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033089	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033090	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420201	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574069	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2273687	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794087	0.81[EUR][1000 genomes]
rs3847612	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847613	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847620	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911898	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3925877	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4083481	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4237664	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4582949	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755397	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755398	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756210	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756211	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756219	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756220	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756221	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55709010	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55834429	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56028027	0.92[EUR][1000 genomes]
rs6484785	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7114383	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72076042	0.89[ASN][1000 genomes]
rs7934047	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35354000-35367800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:35354400-35366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:35354600-35366000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:35359200-35364600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:35361600-35364600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:35361800-35365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:35361800-35367800	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:35361800-35368200	Weak transcription	Hela-S3	cervix
9	chr11:35362000-35366200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:35362000-35366200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:35362000-35366200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:35362000-35368000	Weak transcription	Left Ventricle	heart
13	chr11:35362200-35365400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:35362200-35366200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:35362200-35366200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:35362200-35366800	Weak transcription	Right Atrium	heart
17	chr11:35362200-35367800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:35362400-35368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:35362600-35366000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:35362600-35366200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:35362600-35372800	Weak transcription	NHLF	lung
22	chr11:35362800-35366000	Weak transcription	Psoas Muscle	Psoas
23	chr11:35362800-35366600	Weak transcription	NHDF-Ad	bronchial
24	chr11:35362800-35366800	Weak transcription	Pancreas	Pancrea
25	chr11:35363000-35369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:35363200-35366000	Enhancers	Primary hematopoietic stem cells	blood
27	chr11:35363200-35366200	Weak transcription	Adipose Nuclei	Adipose
28	chr11:35363200-35368600	Weak transcription	Liver	Liver
29	chr11:35363400-35366000	Weak transcription	HepG2	liver
30	chr11:35363400-35367200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:35363400-35367200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr11:35363600-35365200	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr11:35363800-35365400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:35363800-35366000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:35364000-35364600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:35364000-35364600	Enhancers	GM12878-XiMat	blood
37	chr11:35364000-35365400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:35364000-35366800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr11:35364000-35367000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:35364200-35365400	Enhancers	Fetal Thymus	thymus
41	chr11:35364200-35367200	Enhancers	Primary T cells fromperipheralblood	blood
42	chr11:35364400-35364600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr11:35364400-35364800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr11:35364400-35364800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:35364400-35365200	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr11:35364400-35365200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:35364400-35365200	Flanking Active TSS	K562	blood
48	chr11:35364400-35365600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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