Variant report

Variant	rs2903522
Chromosome Location	chr11:46915601-46915602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46910304..46913084-chr11:46915111..46917505,2	K562	blood:
2	chr11:46915187..46917965-chr11:47174526..47177349,2	K562	blood:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10742784	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10769211	0.82[EUR][1000 genomes]
rs10769212	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838624	0.80[ASN][1000 genomes]
rs10838627	0.87[ASN][1000 genomes]
rs10838628	0.87[ASN][1000 genomes]
rs10838629	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11039014	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11039017	0.87[ASN][1000 genomes]
rs11039018	0.94[ASN][1000 genomes]
rs11039024	0.85[ASN][1000 genomes]
rs11039033	0.81[EUR][1000 genomes]
rs12807111	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2035068	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290883	0.80[ASN][1000 genomes]
rs2290884	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2306026	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2306027	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306028	0.80[ASN][1000 genomes]
rs2306035	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306036	0.93[ASN][1000 genomes]
rs2306037	0.92[ASN][1000 genomes]
rs2867219	0.96[ASN][1000 genomes]
rs3816614	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3829940	0.80[AMR][1000 genomes]
rs4752946	0.80[ASN][1000 genomes]
rs4752947	0.80[ASN][1000 genomes]
rs60258676	0.80[ASN][1000 genomes]
rs7118170	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7119247	0.88[ASN][1000 genomes]
rs7940441	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7941252	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7943866	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs898604	0.92[ASN][1000 genomes]
rs964551	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
2	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
8	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
9	chr11:46895400-46917400	Weak transcription	NHLF	lung
10	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
11	chr11:46897400-46921800	Weak transcription	HMEC	breast
12	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
13	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:46898600-46916600	Weak transcription	Liver	Liver
15	chr11:46898800-46916600	Weak transcription	Gastric	stomach
16	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
17	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
19	chr11:46901400-46917400	Weak transcription	NH-A	brain
20	chr11:46905000-46917800	Weak transcription	Right Atrium	heart
21	chr11:46905600-46917400	Weak transcription	Esophagus	oesophagus
22	chr11:46905600-46922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:46907000-46921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:46908000-46916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:46908000-46916800	Weak transcription	Lung	lung
26	chr11:46908000-46917400	Weak transcription	Colonic Mucosa	Colon
27	chr11:46908200-46916600	Weak transcription	Fetal Brain Female	brain
28	chr11:46908400-46916000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:46908600-46916000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:46908600-46916000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:46908600-46916800	Weak transcription	Brain Angular Gyrus	brain
32	chr11:46908800-46918000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:46910000-46918600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:46910400-46917400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:46910400-46919000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:46911200-46915800	Weak transcription	Placenta	Placenta
37	chr11:46911200-46916000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:46911200-46916000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:46911200-46916000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
41	chr11:46911600-46916600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:46912000-46916000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:46912000-46916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:46912000-46916000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:46912000-46916000	Weak transcription	Fetal Lung	lung
46	chr11:46912000-46916000	Weak transcription	Pancreas	Pancrea
47	chr11:46912000-46916000	Weak transcription	HepG2	liver
48	chr11:46912000-46916000	Weak transcription	HSMMtube	muscle
49	chr11:46912000-46916000	Weak transcription	NHEK	skin
50	chr11:46912200-46916000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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