Variant report

Variant	rs2903833
Chromosome Location	chr2:56065103-56065104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518794	1.00[CEU][hapmap]
rs55782463	0.94[EUR][1000 genomes]
rs55834854	0.94[EUR][1000 genomes]
rs56104529	0.94[EUR][1000 genomes]
rs56125160	0.94[EUR][1000 genomes]
rs56237919	0.94[EUR][1000 genomes]
rs72807746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56055000-56066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:56064000-56067200	Enhancers	Stomach Mucosa	stomach
3	chr2:56064200-56069400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:56064600-56065600	Weak transcription	Fetal Lung	lung
5	chr2:56064600-56065800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:56064600-56065800	Weak transcription	Fetal Intestine Large	intestine
7	chr2:56064600-56066000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:56064600-56066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:56064600-56066000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:56064600-56066000	Weak transcription	Fetal Intestine Small	intestine
11	chr2:56064600-56066200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:56064600-56067200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:56064800-56065800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:56064800-56065800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:56064800-56065800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:56064800-56066000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:56064800-56066000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:56064800-56066000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:56064800-56066000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:56064800-56066600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:56064800-56067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:56064800-56068800	Weak transcription	Gastric	stomach
23	chr2:56064800-56070200	Weak transcription	K562	blood
24	chr2:56065000-56066000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:56065000-56066400	Weak transcription	Placenta	Placenta
26	chr2:56065000-56066600	Weak transcription	Pancreas	Pancrea

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