Variant report

Variant	rs2904068
Chromosome Location	chr4:86477567-86477568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs343862	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86466800-86480600	Weak transcription	Esophagus	oesophagus
2	chr4:86474400-86477800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:86475600-86488000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:86475800-86482400	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:86476200-86477600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:86476200-86478200	Enhancers	GM12878-XiMat	blood
7	chr4:86476400-86479400	Enhancers	Primary B cells from cord blood	blood
8	chr4:86476600-86477600	Enhancers	Spleen	Spleen
9	chr4:86476600-86478000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:86476600-86478000	Enhancers	Lung	lung
11	chr4:86476600-86479400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:86476800-86478200	Enhancers	Right Atrium	heart
13	chr4:86476800-86491800	Weak transcription	NHDF-Ad	bronchial
14	chr4:86477000-86477600	Enhancers	HSMM	muscle
15	chr4:86477000-86477600	Enhancers	HSMMtube	muscle
16	chr4:86477000-86478000	Weak transcription	Pancreas	Pancrea
17	chr4:86477000-86493000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:86477200-86478600	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:86477200-86480400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:86477200-86487200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:86477400-86477800	Weak transcription	Right Ventricle	heart
22	chr4:86477400-86483800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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