Variant report

Variant	rs2906649
Chromosome Location	chr7:101577038-101577039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101575829..101577799-chr7:101583954..101585899,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2906653	0.84[ASN][1000 genomes]
rs2970477	0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2970478	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2970493	0.80[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2970494	0.86[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs385854	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs386137	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs404284	0.95[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs414438	0.82[CHB][hapmap]
rs425964	0.90[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs427039	0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs433736	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs434564	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs440923	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs441601	0.85[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs441780	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4729764	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6954798	0.85[ASN][1000 genomes]
rs727544	0.89[ASN][1000 genomes]
rs740302	0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs876826	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101544200-101579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101558600-101577800	Weak transcription	Brain Angular Gyrus	brain
3	chr7:101561200-101584000	Weak transcription	Hela-S3	cervix
4	chr7:101561600-101577600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:101561800-101577400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:101561800-101579200	Weak transcription	NHEK	skin
7	chr7:101562000-101578000	Weak transcription	Colonic Mucosa	Colon
8	chr7:101562000-101583600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:101562800-101578200	Weak transcription	Fetal Kidney	kidney
10	chr7:101563000-101577200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:101563000-101578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:101563200-101577800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:101563400-101578600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:101566200-101579000	Weak transcription	Spleen	Spleen
15	chr7:101566400-101577800	Weak transcription	Gastric	stomach
16	chr7:101566400-101577800	Weak transcription	Lung	lung
17	chr7:101566600-101577200	Weak transcription	Fetal Lung	lung
18	chr7:101567000-101578000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:101567000-101596000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr7:101567200-101577200	Weak transcription	Ovary	ovary
21	chr7:101567200-101577200	Weak transcription	Stomach Mucosa	stomach
22	chr7:101567200-101577800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:101567200-101579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:101567600-101577200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:101567600-101577200	Weak transcription	Aorta	Aorta
26	chr7:101567600-101577800	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:101567600-101577800	Weak transcription	NHLF	lung
28	chr7:101567800-101577200	Weak transcription	HSMMtube	muscle
29	chr7:101568000-101577800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:101568400-101577200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:101568600-101577800	Weak transcription	Psoas Muscle	Psoas
32	chr7:101570000-101577200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:101570000-101579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:101570200-101577200	Weak transcription	Fetal Stomach	stomach
35	chr7:101570200-101578600	Weak transcription	Thymus	Thymus
36	chr7:101570200-101579600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:101570200-101597000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr7:101570400-101577200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:101570400-101578600	Weak transcription	Dnd41	blood
40	chr7:101571400-101577800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:101571400-101577800	Weak transcription	Pancreas	Pancrea
42	chr7:101571600-101577200	Weak transcription	Brain Anterior Caudate	brain
43	chr7:101571600-101577400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:101571600-101577800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr7:101571600-101578000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:101571600-101578000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:101571600-101587400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:101573000-101580000	Weak transcription	K562	blood
49	chr7:101573200-101577400	Weak transcription	Colon Smooth Muscle	Colon
50	chr7:101573800-101577800	Weak transcription	Placenta	Placenta

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