Variant report

Variant	rs2906745
Chromosome Location	chr7:101481197-101481198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101478135..101485394-chr7:101496220..101502463,10	K562	blood:
2	chr7:101456314..101463577-chr7:101474956..101483680,15	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2906717	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906719	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906721	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906741	0.80[AMR][1000 genomes]
rs2906743	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906746	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2906747	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906748	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970461	0.98[EUR][1000 genomes]
rs2970462	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970463	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970464	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970465	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970466	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970467	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970469	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970470	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183694	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101461200-101486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:101461800-101489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:101462200-101482200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:101462200-101484200	Weak transcription	Fetal Kidney	kidney
5	chr7:101463800-101489800	Weak transcription	NHEK	skin
6	chr7:101464600-101488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:101465800-101482000	Weak transcription	K562	blood
8	chr7:101466800-101482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:101466800-101489800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:101466800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:101467000-101482000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:101467200-101481800	Weak transcription	Liver	Liver
13	chr7:101467200-101490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:101467400-101490400	Weak transcription	Fetal Lung	lung
15	chr7:101468800-101486600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:101469000-101483000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:101469000-101486600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:101469000-101489800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:101469200-101489800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:101469400-101487000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:101469400-101489800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:101469600-101487000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:101469600-101490000	Weak transcription	HepG2	liver
24	chr7:101470000-101482400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:101470000-101496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:101470200-101482200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:101470200-101482200	Weak transcription	Ovary	ovary
28	chr7:101472000-101486800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:101472000-101490400	Weak transcription	Osteobl	bone
30	chr7:101472400-101489400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:101472600-101481800	Weak transcription	Right Atrium	heart
32	chr7:101472600-101482000	Weak transcription	Fetal Heart	heart
33	chr7:101472800-101488600	Weak transcription	Hela-S3	cervix
34	chr7:101473400-101490600	Weak transcription	Primary T cells from cord blood	blood
35	chr7:101473600-101482200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:101473800-101481800	Weak transcription	Lung	lung
37	chr7:101474600-101487000	Weak transcription	Dnd41	blood
38	chr7:101474800-101489800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:101475000-101482000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:101475000-101488600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:101475600-101482200	Weak transcription	Fetal Thymus	thymus
42	chr7:101475600-101488400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:101475600-101488800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:101475800-101481400	Weak transcription	Placenta	Placenta
45	chr7:101475800-101482000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:101475800-101487000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:101476200-101482200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:101476200-101482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:101476200-101482400	Weak transcription	Right Ventricle	heart
50	chr7:101476200-101489800	Weak transcription	Monocytes-CD14+_RO01746	blood

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